chr4 : 106,056,999 – 106,057,306
307 bp 65 TFs 0 linked genes
This 307 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:106,051,999 – 106,062,306
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP GSE110655.AR.LNCaP 79 bp overlap
ChIP LNCaP_DHT24H GSE58428.AR.LNCaP_DHT24H 58 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 106 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 145 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 152 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 206 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 71 bp overlap
BATF3 1 dataset
ChIP GM12878 GSE97661.BATF3.GM12878 237 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 109 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 133 bp overlap
BRD4 2 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 284 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 246 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 140 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 105 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 150 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
FOXA1 5 datasets
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 55 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 64 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 64 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 79 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 233 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 307 bp overlap
ChIP DE DE-FOXA2-2 274 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 85 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 307 bp overlap
ChIP DE DE-GATA4-2 307 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 307 bp overlap
ChIP DE DE-GATA6-2 307 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF8 3 datasets
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
Motif DE_60h DE_60h-IRF8_MA0652.2 13 bp overlap
Irf1 3 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 284 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 244 bp overlap
MZF1 1 dataset
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 151 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 280 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 282 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 285 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 280 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 172 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 113 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 191 bp overlap
Nr2e3 3 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU5F1 4 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 284 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 181 bp overlap
RARA::RXRG 2 datasets
Motif DE_48h DE_48h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 307 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 215 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 164 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 228 bp overlap
SOX10 3 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX15 3 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap
Motif DE_60h DE_60h-SOX15_MA1152.2 7 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 169 bp overlap
SOX21 3 datasets
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SOX4 3 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SPIB 3 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Sox1 3 datasets
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Sox11 4 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox6 3 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Spi1 3 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_48h DE_48h-Spz1_MA0111.1 11 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 212 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 168 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 307 bp overlap
Yy1 1 dataset
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
ZFP14 3 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZKSCAN3 1 dataset
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF418 3 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 117 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 275 bp overlap
ZNF558 3 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF582 4 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 1 dataset
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
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