chr4 : 83,390,267 83,390,906
639 bp 70 TFs 0 linked genes
This 639 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:83,385,267 – 83,395,906
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 219 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 273 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 295 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 243 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 236 bp overlap
CTCF 8 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 92 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 63 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 61 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 116 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 164 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP endodermal cell ENCFF471YCZ 307 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 593 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 62 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 418 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 74 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 362 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 534 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 583 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 534 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 363 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 462 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 488 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 426 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 392 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 304 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 433 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 483 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 540 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 190 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 382 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 639 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 558 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 228 bp overlap
ChIP hESC GSE18292.NANOG.hESC 157 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 97 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nrf1 1 dataset
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 448 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU5F1 14 datasets
ChIP BG03 GSE21614.POU5F1.BG03 228 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 589 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 639 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 590 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 639 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 139 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 190 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 370 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 211 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 639 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 639 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 271 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 611 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 405 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 544 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 166 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 335 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 264 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 639 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 567 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 459 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 616 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 569 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 194 bp overlap
SMARCA4 4 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 172 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 197 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 217 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 310 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 256 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 205 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 545 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 255 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 157 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 167 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 506 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 88 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 490 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap