chr4 : 81,473,789 – 81,474,437
648 bp 67 TFs 1 linked gene
This 648 bp open chromatin element is linked to RASGEF1B and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RASGEF1B 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:81,468,789 – 81,479,437
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
EP300 2 datasets
ChIP sigmoid colon ENCFF524QSR 271 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 261 bp overlap
FOXA1 16 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 144 bp overlap
ChIP MCF-7 ENCFF465LTH 391 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 163 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 131 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 104 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 116 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 214 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 133 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 142 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 149 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 147 bp overlap
ChIP liver ENCFF537QZV 421 bp overlap
ChIP liver ENCFF749ERP 345 bp overlap
ChIP liver ERP002306.FOXA1.liver 166 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 612 bp overlap
ChIP DE DE-FOXA2-2 581 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCFF888VJF 188 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 2 datasets
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 441 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_36h DE_36h-MSANTD3_MA1523.2 7 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
POLR2A 12 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 341 bp overlap
ChIP prostate gland ENCFF545MVF 509 bp overlap
ChIP prostate gland ENCFF881OMH 278 bp overlap
ChIP sigmoid colon ENCFF725QFT 289 bp overlap
ChIP sigmoid colon ENCFF748YVT 261 bp overlap
ChIP sigmoid colon ENCFF754JQR 136 bp overlap
ChIP stomach ENCFF278MYS 241 bp overlap
ChIP stomach ENCFF820WZN 345 bp overlap
ChIP transverse colon ENCFF607LKE 371 bp overlap
ChIP transverse colon ENCFF840PXT 321 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 405 bp overlap
ChIP vagina ENCFF305NWS 460 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 346 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 230 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 457 bp overlap
ChIP liver ENCFF522JHE 214 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 303 bp overlap
ChIP liver ENCFF807CIA 448 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 409 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 129 bp overlap
SRF 1 dataset
Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap
Sox1 2 datasets
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 4 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 326 bp overlap
ChIP liver ENCFF400MBC 542 bp overlap
ChIP liver ENCFF515BWJ 486 bp overlap
ChIP liver ENCFF515BWJ 523 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 376 bp overlap
ZKSCAN1 1 dataset
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 83 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN16 3 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ChIP HEK293 ENCFF533NFT 279 bp overlap
ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 274 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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