chr4 : 52,718,125 52,718,453
328 bp 46 TFs 5 linked genes
This 328 bp open chromatin element is linked to 5 target genes and is bound by 46 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000286161 3.9 kb Proximal Proximity
SNORA26 4.9 kb Proximal Proximity
MIR4449 5.4 kb Proximal Proximity
DANCR 5.7 kb Proximal Proximity
LINC01618 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:52,713,125 – 52,723,453
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AGO1 5 datasets
ChIP K-562 GSE120104.AGO1.K-562 250 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 240 bp overlap
ChIP K562 ENCFF025NLP 216 bp overlap
ChIP K562 ENCFF741BCI 201 bp overlap
ChIP K562 ENCFF741BCI 328 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 251 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 203 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 209 bp overlap
ATF3 4 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 149 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 301 bp overlap
ChIP K562 ENCFF604FPV 328 bp overlap
BRD4 2 datasets
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 173 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 328 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 200 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 211 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 172 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 231 bp overlap
ETS1 1 dataset
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 235 bp overlap
EWSR1 1 dataset
ChIP K-562 ENCSR142YYA.EWSR1.K-562 328 bp overlap
FOS 2 datasets
ChIP Hep-G2 ENCSR177HDZ.FOS.Hep-G2 128 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 239 bp overlap
FOSL1 3 datasets
ChIP 143B GSE74230.FOSL1.143B 229 bp overlap
ChIP K-562 ENCSR000BMV.FOSL1.K-562 179 bp overlap
ChIP K562 ENCFF728OTE 231 bp overlap
FOSL2 4 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 232 bp overlap
ChIP HepG2 ENCFF548CXY 225 bp overlap
ChIP HepG2 ENCFF796NIA 257 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 211 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 319 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 328 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 328 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 213 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 328 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 245 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 270 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 300 bp overlap
ChIP Kasumi-1_ctrl GSE117105.JUND.Kasumi-1_ctrl 178 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 239 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 99 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 222 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 306 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 247 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 82 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 328 bp overlap
ChIP MCF-10A_ctrl GSE115787.MYBL2.MCF-10A_ctrl 241 bp overlap
MYC 1 dataset
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 137 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 128 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 176 bp overlap
POLR2A 17 datasets
ChIP GM12878 ENCFF263VRI 322 bp overlap
ChIP GM12891 ENCFF012SUT 328 bp overlap
ChIP GM12892 ENCFF245LYF 328 bp overlap
ChIP GM12892 ENCFF506PGQ 328 bp overlap
ChIP GM12892 ENCFF542ZFO 328 bp overlap
ChIP GM18505 ENCFF311CYB 281 bp overlap
ChIP GM23338 ENCFF450WCS 170 bp overlap
ChIP GM23338 ENCFF450WCS 203 bp overlap
ChIP H1 ENCFF770YBQ 301 bp overlap
ChIP H1 ENCFF833NJP 229 bp overlap
ChIP HL-60 ENCFF321XKE 328 bp overlap
ChIP HL-60 ENCFF321XKE 180 bp overlap
ChIP K562 ENCFF215CWW 328 bp overlap
ChIP K562 ENCFF643HGX 103 bp overlap
ChIP PFSK-1 ENCFF576NIT 328 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 328 bp overlap
ChIP erythroblast ENCFF498VMR 328 bp overlap
POLR2G 3 datasets
ChIP HepG2 ENCFF241AEG 328 bp overlap
ChIP HepG2 ENCFF508UTS 328 bp overlap
ChIP K562 ENCFF648YPL 328 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 291 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF939HTZ 328 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 203 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 163 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 64 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 72 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 58 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 106 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 231 bp overlap
SUPT5H 7 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 328 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 327 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 261 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 328 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 328 bp overlap
ChIP U2OS_siMYC_High GSE115365.SUPT5H.U2OS_siMYC_High 328 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 328 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 161 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 277 bp overlap
ZNF121 3 datasets
ChIP HEK293 GSE76494.ZNF121.HEK293 222 bp overlap
ChIP K562 ENCFF314GND 315 bp overlap
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 189 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 171 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 221 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 244 bp overlap
ZNF770 5 datasets
ChIP HEK293 ENCFF468FCG 216 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 302 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 218 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 299 bp overlap
ChIP HepG2 ENCFF233UVH 328 bp overlap