chr4 : 39,062,177 39,062,436
259 bp 65 TFs 0 linked genes
This 259 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:39,057,177 – 39,067,436
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 259 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 70 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 206 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 215 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 259 bp overlap
Alx4 2 datasets
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BRD4 4 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 191 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 195 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 230 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 190 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 185 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 182 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 259 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 259 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 141 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 209 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 259 bp overlap
CTCF 4 datasets
ChIP C4-2B ENCFF821XVN 107 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 143 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 259 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 179 bp overlap
DPF2 2 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 248 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 259 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 259 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 155 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 224 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 259 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 157 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 254 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 131 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Isl1 2 datasets
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF128TYE 67 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 134 bp overlap
KMT2C 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 196 bp overlap
KMT2D 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 230 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 142 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MXI1 4 datasets
ChIP SK-N-SH ENCFF746HVJ 259 bp overlap
ChIP SK-N-SH ENCFF746HVJ 74 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 239 bp overlap
ChIP neural cell ENCFF623HQN 93 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 259 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 174 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 259 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 259 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 259 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 218 bp overlap
NKX6-1 2 datasets
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 128 bp overlap
NR3C1 2 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 121 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 131 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 239 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 176 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 227 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 8 datasets
ChIP H1 ENCFF698ZAP 199 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 259 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 259 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 210 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 239 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 259 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 256 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 148 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 259 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 259 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 156 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 230 bp overlap
ChIP neural cell ENCFF564MOT 259 bp overlap
RBPJ 5 datasets
ChIP GIC GSE79734.RBPJ.GIC 171 bp overlap
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 193 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 259 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 259 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 120 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 202 bp overlap
RFX1 1 dataset
ChIP K562 ENCFF421AVO 60 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 187 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF896IJG 259 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 210 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 238 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 218 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 175 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 154 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 176 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 171 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 119 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 259 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 201 bp overlap
SMARCA4 9 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 93 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 243 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 259 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 259 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 259 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 259 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 259 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 214 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 157 bp overlap
SMARCC1 3 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 257 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 181 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 225 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 221 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 259 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 259 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 185 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 167 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 259 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 185 bp overlap
ChIP HepG2 ENCFF331VPZ 203 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap