chr4 : 23,932,269 – 23,932,525
256 bp 49 TFs 0 linked genes
This 256 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:23,927,269 – 23,937,525
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 160 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 192 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 171 bp overlap
CTCF 39 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 81 bp overlap
ChIP BE2C ENCFF757SRF 256 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 160 bp overlap
ChIP GM23338 ENCFF832KWE 256 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 222 bp overlap
ChIP H9 ENCFF152GTF 194 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 164 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 167 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 159 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 205 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 143 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 94 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 147 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 153 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 256 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 232 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 144 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 188 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 138 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 234 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 90 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 129 bp overlap
ChIP endodermal cell ENCFF471YCZ 256 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 127 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 225 bp overlap
ChIP fibroblast of lung ENCFF084DUH 241 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 217 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 197 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 126 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 213 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 256 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 182 bp overlap
ChIP heart left ventricle ENCFF548XHH 256 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 189 bp overlap
ChIP neural progenitor cell ENCFF420RBO 256 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 200 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 178 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 253 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 229 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 226 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 172 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 179 bp overlap
HNF1A 2 datasets
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
Motif ES_0h ES_0h-HNF1B_MA0153.2 13 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 202 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 215 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 217 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 256 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 213 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 256 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 256 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 241 bp overlap
ChIP hESC GSE18292.NANOG.hESC 202 bp overlap
NR1H2::RXRA 2 datasets
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
Motif ES_0h ES_0h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
NR2F1 4 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
Nr2F6 2 datasets
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 9 datasets
ChIP GM23338 ENCFF333SNB 221 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 256 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 256 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 174 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 232 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 206 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 237 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 151 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 151 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 2 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 238 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 176 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RORB 2 datasets
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 2 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
Rxra 2 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SATB1 1 dataset
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 139 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 205 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 244 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 216 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 256 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 256 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 63 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 207 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 177 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 177 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 256 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 256 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Motif ES_0h ES_0h-THRB_MA1574.2 13 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 63 bp overlap
TRIM24 1 dataset
ChIP LNCaP_ETOH GSE69331.TRIM24.LNCaP_ETOH 107 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZKSCAN1 1 dataset
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 246 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 225 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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