chr3 : 195,297,445 195,298,276
831 bp 66 TFs 3 linked genes
This 831 bp open chromatin element is linked to XXYLT1, ACAP2, and PPP1R2 and is bound by 66 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
XXYLT1 26.8 kb Distal Multiome
ACAP2 145.1 kb Distal Multiome
PPP1R2 245.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:195,292,445 – 195,303,276
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 43 datasets
ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 131 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 164 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 201 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 201 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 142 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 275 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 245 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 183 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 196 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 187 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 177 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 265 bp overlap
ChIP VCaP GSE148358.AR.VCaP 220 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 467 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 323 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 264 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 358 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 287 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 507 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 460 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 720 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 437 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 247 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 321 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 240 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 165 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 211 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 212 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 384 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 350 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 412 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 289 bp overlap
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 176 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 202 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 214 bp overlap
ChIP prostate GSE56288.AR.prostate 144 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 133 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 250 bp overlap
ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 174 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 264 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 299 bp overlap
ChIP prostate_1853_T GSE130408.AR.prostate_1853_T 203 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 226 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 343 bp overlap
ChIP K562 ENCFF938UXQ 273 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 245 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 440 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 199 bp overlap
ChIP K562 ENCFF963TXY 327 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 274 bp overlap
ChIP K562 ENCFF673OEZ 249 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 116 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 151 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DMRTA1 1 dataset
Motif DE_72h DE_72h-DMRTA1_MA1707.2 10 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 240 bp overlap
Dmrt1 1 dataset
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
EBF1 1 dataset
ChIP LCL GSE75503.EBF1.LCL 57 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
ChIP hESC GSE26097.EOMES.hESC 157 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 142 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 11 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 250 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 267 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 226 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 105 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 271 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 296 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 208 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 259 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 236 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 215 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 225 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 182 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 171 bp overlap
ChIP DE DE-FOXA2-1 831 bp overlap
ChIP DE DE-FOXA2-2 831 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 214 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 171 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 233 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 171 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 147 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 246 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 188 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 287 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 275 bp overlap
ChIP K562 ENCFF094CMK 221 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 242 bp overlap
GATA2 2 datasets
ChIP VCaP GSE125236.GATA2.VCaP 168 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 180 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 291 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 242 bp overlap
ChIP DE DE-GATA4-1 831 bp overlap
ChIP DE DE-GATA4-2 831 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 806 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 308 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 321 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 262 bp overlap
ChIP DE DE-GATA6-1 831 bp overlap
ChIP DE DE-GATA6-2 831 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 831 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 302 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 246 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 831 bp overlap
ChIP foregut GSE117136.GATA6.foregut 799 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 262 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 570 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 254 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 436 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 137 bp overlap
HOXB13 3 datasets
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 183 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 250 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 154 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 325 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 349 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 242 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 228 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR910JAI.NCOR1.K-562 242 bp overlap
ChIP K562 ENCFF788MPU 333 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 245 bp overlap
NR3C1 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 260 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 117 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 165 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 275 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 591 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 298 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 831 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 715 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 787 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 316 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 241 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 795 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 811 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 290 bp overlap
ChIP K562 ENCFF059YCJ 236 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 298 bp overlap
TAL1 13 datasets
ChIP CD34 GSE52924.TAL1.CD34 99 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 92 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 236 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 264 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 212 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 253 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 278 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 291 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 279 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 198 bp overlap
ChIP K562 ENCFF620GMX 156 bp overlap
ChIP K562 ENCFF661CCK 269 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 177 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 365 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 152 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 331 bp overlap
TP63 1 dataset
Motif DE_72h DE_72h-TP63_MA0525.2 18 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 220 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 224 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 242 bp overlap
ZSCAN29 1 dataset
Motif DE_72h DE_72h-ZSCAN29_MA1602.2 11 bp overlap