chr3 : 150,220,962 – 150,221,105
143 bp 47 TFs 0 linked genes
This 143 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:150,215,962 – 150,226,105
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 143 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 143 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 143 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 92 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 143 bp overlap
BRD4 4 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 143 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 143 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 143 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 135 bp overlap
CDK8 1 dataset
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 53 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 90 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 90 bp overlap
CTCF 70 datasets
ChIP 22Rv1 ENCFF466OXN 143 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 82 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 143 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 115 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 143 bp overlap
ChIP C4-2B ENCFF821XVN 143 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 82 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 143 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 139 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 73 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 70 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 143 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 50 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 143 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 85 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 143 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 143 bp overlap
ChIP HFFc6 ENCFF005CJI 60 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 143 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 89 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 57 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 65 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 140 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 116 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 143 bp overlap
ChIP NPC GSE115407.CTCF.NPC 143 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 134 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 143 bp overlap
ChIP Panc1 ENCFF056JQX 143 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 128 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 130 bp overlap
ChIP RWPE2 ENCFF911IEE 143 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 55 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 143 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 139 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 143 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 53 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 107 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 126 bp overlap
ChIP VCaP ENCFF858YQT 82 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 143 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 143 bp overlap
ChIP brain ENCFF163BBN 123 bp overlap
ChIP chondrocyte ENCFF134ORZ 143 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 71 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 71 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 133 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 73 bp overlap
ChIP gastrocnemius-medialis ENCSR071XWO.CTCF.gastrocnemius-medialis 88 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 143 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 125 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 72 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 143 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 143 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 57 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 100 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 121 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 87 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 143 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 66 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 65 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 143 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 123 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 143 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 66 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 142 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 76 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 53 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 59 bp overlap
ChIP uterus ENCSR527TPP.CTCF.uterus 51 bp overlap
DPF2 5 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 143 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 143 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 57 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 141 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 73 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 125 bp overlap
ChIP DE DE-FOXA2-1 136 bp overlap
ChIP DE DE-FOXA2-2 118 bp overlap
GLIS2 1 dataset
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 64 bp overlap
HOXB13 2 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 143 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 133 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 143 bp overlap
ChIP K562 ENCFF348IBL 143 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 143 bp overlap
KMT2C 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4-T910M 74 bp overlap
KMT2D 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 135 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 141 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 93 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 143 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 68 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 126 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 143 bp overlap
RAD21 19 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 143 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 143 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 143 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 143 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 55 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 78 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 143 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 143 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 143 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 143 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 79 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 129 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 54 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 143 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 143 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 143 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 57 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 107 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 126 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 143 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 65 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 143 bp overlap
ChIP neural cell ENCFF882LXX 143 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 58 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 143 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 69 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 95 bp overlap
SMARCC1 4 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 143 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 140 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 143 bp overlap
SMC1 6 datasets
ChIP DKO GSE131606.SMC1.DKO 143 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 143 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 143 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 85 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 117 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 131 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 86 bp overlap
SMC3 3 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 132 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 143 bp overlap
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 60 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 143 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 143 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 140 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 143 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 143 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 62 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 62 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 107 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 90 bp overlap
STAT3 17 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 135 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 143 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 143 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 143 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 143 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 143 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 143 bp overlap
ChIP T-47D_JC4737 GSE126004.STAT3.T-47D_JC4737 143 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 143 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 143 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 143 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 143 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 143 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 143 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 143 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 143 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 143 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 143 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 143 bp overlap
ZBTB33 2 datasets
ChIP HepG2 ENCFF778UKV 143 bp overlap
ChIP MCF-7 ENCFF622BUU 143 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 89 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 143 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 100 bp overlap
ZNF501 1 dataset
ChIP HepG2 ENCFF879XZR 60 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
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