chr3 : 130,095,749 130,096,324
575 bp 61 TFs 2 linked genes
This 575 bp open chromatin element is linked to LINC02014 and ALG1L2 and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC02014 1.4 kb Proximal Proximity
ALG1L2 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:130,090,749 – 130,101,324
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 575 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 430 bp overlap
Bcl11B 1 dataset
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
CTCF 7 datasets
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP HepG2 ENCFF757EKU 300 bp overlap
ChIP Panc1 ENCFF056JQX 398 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 163 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 219 bp overlap
ChIP heart right ventricle ENCFF577TID 282 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 207 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 73 bp overlap
ChIP BLaER1 ENCFF093OYK 329 bp overlap
ChIP BLaER1 ENCFF364PUR 259 bp overlap
E2F4 1 dataset
ChIP HepG2 ENCFF311TOD 471 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 162 bp overlap
Ebf4 1 dataset
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 163 bp overlap
KLF1 1 dataset
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
KLF13 1 dataset
Motif DE_36h DE_36h-KLF13_MA0657.2 17 bp overlap
KLF16 2 datasets
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_36h DE_36h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
LIN54 1 dataset
ChIP HepG2 ENCFF662XDE 575 bp overlap
MAX 2 datasets
ChIP HepG2 ENCFF507HCX 465 bp overlap
ChIP HepG2 ENCFF507HCX 255 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 540 bp overlap
NFIL3 1 dataset
Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
NR2F6 1 dataset
Motif DE_36h DE_36h-NR2F6_MA1539.1 15 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 399 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 258 bp overlap
PRDM10 1 dataset
ChIP HepG2 ENCFF324FNA 521 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 263 bp overlap
RUNX2 2 datasets
Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 307 bp overlap
RUNX3 2 datasets
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
ChIP GM12878 ENCFF395WHA 187 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 290 bp overlap
SP3 1 dataset
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 332 bp overlap
TFAP2A 1 dataset
Motif DE_36h DE_36h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_36h DE_36h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_36h DE_36h-TFAP2C_MA0815.1 13 bp overlap
TP53 4 datasets
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 262 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 205 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 329 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 195 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 291 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 296 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 201 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 191 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 184 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 190 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 207 bp overlap
Tfcp2l1 1 dataset
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
VEZF1 1 dataset
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 499 bp overlap
ZIC5 1 dataset
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCFF764ZIC 104 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 525 bp overlap
ZNF772 2 datasets
ChIP HepG2 ENCFF728OGE 537 bp overlap
ChIP HepG2 ENCFF728OGE 358 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 417 bp overlap
ZSCAN29 1 dataset
ChIP HepG2 ENCFF212SBM 562 bp overlap
ZSCAN31 1 dataset
ChIP HepG2 ENCFF066FRL 455 bp overlap