chr3 : 125,057,572 – 125,058,037
465 bp 50 TFs 1 linked gene
This 465 bp open chromatin element is linked to HEG1 and is bound by 50 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HEG1 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:125,052,572 – 125,063,037
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 221 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 138 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF604FPV 252 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 92 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 160 bp overlap
BRD4 10 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 94 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 100 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 150 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 137 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 88 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 254 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 282 bp overlap
ChIP SUM229PE_neg_DMSO_24h GSE87418.BRD4.SUM229PE_neg_DMSO_24h 77 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 137 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 170 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 206 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 162 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 311 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 297 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 380 bp overlap
CTCF 1 dataset
ChIP SUM159 GSE46055.CTCF.SUM159 92 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCFF089VPQ 51 bp overlap
ESR1 6 datasets
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 125 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 77 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 274 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 289 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 300 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 301 bp overlap
ESR1_Y537N 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 200 bp overlap
ESR2 2 datasets
ChIP MDA-MB-231_LY500307 GSE108979.ESR2.MDA-MB-231_LY500307 199 bp overlap
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 255 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 235 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 189 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 76 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 59 bp overlap
FOXA2 1 dataset
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 94 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 185 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 398 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 322 bp overlap
HNRNPK 4 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 366 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 343 bp overlap
ChIP HepG2 ENCFF493GNS 465 bp overlap
ChIP HepG2 ENCFF826MXP 465 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 208 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 175 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 79 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 58 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 128 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 261 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 118 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 133 bp overlap
MEF2D 1 dataset
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 278 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 137 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 86 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 55 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 150 bp overlap
PGR 2 datasets
ChIP AB32 GSE31129.PGR.AB32 197 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 54 bp overlap
POLR2A 2 datasets
ChIP HeLa-S3 ENCFF773DNG 295 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 167 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 166 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 166 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 86 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 215 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 145 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 329 bp overlap
SMAD3 4 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 302 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 169 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 60 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 110 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 112 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 157 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 158 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 133 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 51 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 138 bp overlap
ChIP HeLa-S3 ENCFF971JGA 69 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 186 bp overlap
SMC3 1 dataset
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 120 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 132 bp overlap
TP53 2 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 165 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 192 bp overlap
TP63 14 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 156 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 210 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 210 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 216 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 238 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 202 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 205 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 272 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 155 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 268 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 192 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 222 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 215 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 155 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 154 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 144 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 107 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 136 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 196 bp overlap
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