chr1 : 63,198,425 63,199,296
871 bp 65 TFs 2 linked genes
This 871 bp open chromatin element is linked to FOXD3-AS1 and ALG6 and is bound by 65 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
FOXD3-AS1 123.7 kb Distal Multiome
ALG6 168.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:63,193,425 – 63,204,296
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 394 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 414 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 249 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 237 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 325 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 474 bp overlap
BRD4 5 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 400 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 866 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 277 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 59 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 160 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP H1 ENCFF126NLU 279 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 266 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 76 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 2 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 181 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 134 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 142 bp overlap
EZH2 4 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 239 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 274 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 82 bp overlap
ChIP neural progenitor cell ENCFF018MKA 644 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 306 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 325 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 265 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 169 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 569 bp overlap
ChIP DE DE-GATA4-2 819 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 290 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 555 bp overlap
ChIP DE DE-GATA6-2 842 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 712 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 694 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 661 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 779 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 715 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 556 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 125 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 200 bp overlap
KLF4 4 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 82 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 201 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 142 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 102 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 109 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 113 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 555 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 254 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 506 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 309 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 298 bp overlap
ChIP hESC GSE18292.NANOG.hESC 169 bp overlap
ChIP hESC GSE20650.NANOG.hESC 99 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 212 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 3 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 287 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 273 bp overlap
POU5F1 16 datasets
ChIP BG03 GSE21614.POU5F1.BG03 182 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 65 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 199 bp overlap
ChIP GM23338 ENCFF333SNB 215 bp overlap
ChIP H1 ENCFF698ZAP 86 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 548 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 255 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 377 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 52 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 201 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 176 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 169 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 204 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 316 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 183 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 115 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 231 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 239 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 296 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 411 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 359 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 133 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 459 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 193 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 193 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 262 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 262 bp overlap
SCRT1 2 datasets
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 297 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 818 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 757 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 746 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 707 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 679 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 184 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 190 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 219 bp overlap
SMARCA4 5 datasets
ChIP NSC GSE125033.SMARCA4.NSC 322 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 153 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 217 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 262 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 518 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 315 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 472 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 611 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 633 bp overlap
SNAI2 2 datasets
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SOX10 2 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 259 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 365 bp overlap
SOX2 3 datasets
ChIP RENVM GSE49404.SOX2.RENVM 230 bp overlap
ChIP hESC GSE18292.SOX2.hESC 137 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 238 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 244 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 189 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 124 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 152 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 74 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 187 bp overlap
ChIP H1 ENCFF778PAX 145 bp overlap
TP53 1 dataset
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 255 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 136 bp overlap