chr3 : 111,006,629 111,007,008
379 bp 58 TFs 0 linked genes
This 379 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:111,001,629 – 111,012,008
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
CTCF 99 datasets
ChIP 22Rv1 ENCFF466OXN 228 bp overlap
ChIP 22Rv1 ENCFF466OXN 379 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 255 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 258 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 209 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 148 bp overlap
ChIP A549 ENCFF034FVO 211 bp overlap
ChIP A549 ENCFF434LUY 189 bp overlap
ChIP A673 ENCFF123WOM 282 bp overlap
ChIP BE2C ENCFF757SRF 211 bp overlap
ChIP C4-2B ENCFF821XVN 379 bp overlap
ChIP C4-2B ENCFF821XVN 379 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 123 bp overlap
ChIP DND-41 ENCFF913MRA 234 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 75 bp overlap
ChIP GM23338 ENCFF531QOI 212 bp overlap
ChIP GM23338 ENCFF772DML 111 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 262 bp overlap
ChIP H1 ENCFF414GZI 180 bp overlap
ChIP H1 ENCFF764RHO 192 bp overlap
ChIP H9 ENCFF152GTF 255 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 112 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 94 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 110 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 95 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 103 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 121 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 107 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 113 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 50 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 181 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 191 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 115 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 122 bp overlap
ChIP HCT116 ENCFF003KHP 270 bp overlap
ChIP HCT116 ENCFF003KHP 331 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 85 bp overlap
ChIP HFFc6 ENCFF005CJI 340 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 162 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 116 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 123 bp overlap
ChIP HeLa-S3 ENCFF626XQK 192 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 157 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 337 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 221 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 125 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 101 bp overlap
ChIP HepG2 ENCFF194VBQ 190 bp overlap
ChIP HepG2 ENCFF348BUL 169 bp overlap
ChIP HepG2 ENCFF757EKU 269 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 56 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 169 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 209 bp overlap
ChIP Loucy ENCFF359TVQ 150 bp overlap
ChIP Loucy ENCFF359TVQ 323 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 144 bp overlap
ChIP MCF 10A ENCFF988BGF 305 bp overlap
ChIP MCF-7 ENCFF139NQI 217 bp overlap
ChIP MCF-7 ENCFF162GNE 201 bp overlap
ChIP MCF-7 ENCFF210JUZ 270 bp overlap
ChIP MCF-7 ENCFF414SZG 176 bp overlap
ChIP MCF-7 ENCFF844STM 179 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 184 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 132 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 50 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 108 bp overlap
ChIP PC-3 ENCFF487TUI 131 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 196 bp overlap
ChIP RWPE2 ENCFF911IEE 379 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 55 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 154 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 343 bp overlap
ChIP VCaP ENCFF858YQT 168 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 255 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 198 bp overlap
ChIP chondrocyte ENCFF134ORZ 170 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 216 bp overlap
ChIP endodermal cell ENCFF471YCZ 251 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 64 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 253 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 230 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 99 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 130 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 66 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 196 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 154 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 137 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 81 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 108 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 103 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 127 bp overlap
ChIP neural crest cell ENCFF182LWK 334 bp overlap
ChIP neural progenitor cell ENCFF420RBO 208 bp overlap
ChIP neural progenitor cell ENCFF581WPG 379 bp overlap
ChIP neural progenitor cell ENCFF581WPG 329 bp overlap
ChIP placenta ENCFF029PHY 328 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 302 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 233 bp overlap
ChIP right lobe of liver ENCFF011NDG 326 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 347 bp overlap
E2F1 1 dataset
Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap
E2F2 1 dataset
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HES6 1 dataset
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 23 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 67 bp overlap
ChIP A549 ENCFF047SFC 186 bp overlap
ChIP H1 ENCFF698EWO 193 bp overlap
ChIP H1 ENCFF967OJF 188 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 68 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 101 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 118 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 86 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 154 bp overlap
ChIP HCT116 ENCFF568PEO 235 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.RAD21.HEC-1-B_F-insertion 75 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.RAD21.HEC-1-B_R1-insertion 67 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 56 bp overlap
ChIP HepG2 ENCFF360ZSW 186 bp overlap
ChIP HepG2 ENCFF906QIS 157 bp overlap
ChIP HepG2 ENCFF963UBJ 177 bp overlap
ChIP Ishikawa ENCFF570JVV 182 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 189 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 112 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 69 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 95 bp overlap
ChIP liver ENCFF485PAC 236 bp overlap
ChIP liver ENCFF522JHE 269 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 78 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 94 bp overlap
SMC3 1 dataset
ChIP HepG2 ENCFF745UAV 205 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAG1 6 datasets
ChIP HeLa GSE126990.STAG1.HeLa 110 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 101 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 71 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 94 bp overlap
ChIP HepG2 ENCFF843EBZ 236 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 100 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 167 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF362 1 dataset
ChIP HepG2 ENCFF256AZN 337 bp overlap
ZNF384 4 datasets
ChIP HEK293T ENCFF019DZX 131 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 149 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF129PLC 63 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap