chr3 : 84,961,395 – 84,962,111
716 bp 46 TFs 1 linked gene
This 716 bp open chromatin element is linked to CADM2 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CADM2 2.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:84,956,395 – 84,967,111
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 527 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 331 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 580 bp overlap
BRD4 12 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 646 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 457 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 172 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 246 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 639 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 612 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 437 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 58 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 232 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 386 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 557 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 192 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF998XEK 88 bp overlap
ChIP H1 ENCFF998XEK 292 bp overlap
ChIP H1 ENCFF998XEK 493 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 94 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 193 bp overlap
CTCF 10 datasets
ChIP RH4 GSE83726.CTCF.RH4 398 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 190 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 241 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 199 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 131 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 141 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 505 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 340 bp overlap
ChIP neural cell ENCFF335ADI 505 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 236 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 279 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 396 bp overlap
EZH2 7 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 62 bp overlap
ChIP T98G GSE112240.EZH2.T98G 716 bp overlap
ChIP astrocyte ENCFF365JTP 283 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 431 bp overlap
ChIP hepatocyte ENCFF552DZB 622 bp overlap
ChIP hepatocyte ENCFF552DZB 657 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 74 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 170 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 379 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 324 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 227 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 221 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 194 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 205 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 166 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 447 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 445 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 716 bp overlap
MXI1 4 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 304 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 316 bp overlap
ChIP neural cell ENCFF623HQN 539 bp overlap
ChIP neural cell ENCFF623HQN 568 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 599 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 308 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 589 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 270 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 604 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 607 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 486 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 308 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 209 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 277 bp overlap
Nrf1 1 dataset
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
PCGF1 2 datasets
ChIP WA01 GSE104690.PCGF1.WA01 365 bp overlap
ChIP WA01 GSE104690.PCGF1.WA01 253 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 377 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 290 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 496 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 134 bp overlap
RAD21 4 datasets
ChIP RH4 GSE83726.RAD21.RH4 716 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 531 bp overlap
ChIP neural cell ENCFF564MOT 421 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 258 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 268 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 244 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 267 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 362 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 161 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 96 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 152 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 360 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 463 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 408 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 249 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 287 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 260 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 241 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 193 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 410 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 527 bp overlap
TRIM24 1 dataset
ChIP LNCaP_DHT GSE69331.TRIM24.LNCaP_DHT 313 bp overlap
ZBTB14 1 dataset
Motif DE_12h DE_12h-ZBTB14_MA1650.2 8 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 395 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
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