chr3 : 79,822,130 – 79,822,419

289 bp 75 TFs 0 linked genes

This 289 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

75 transcription factors

ATF4 1 dataset

Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap

ATF7 1 dataset

Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CEBPG 1 dataset

Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap

CTCF 7 datasets

Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

ChIP MCF-7 ENCFF198DQX 214 bp overlap

ChIP MCF-7 ENCFF494VXA 214 bp overlap

ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 135 bp overlap

ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 217 bp overlap

ChIP PC-3 ENCSR359LOD.CTCF.PC-3 188 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 289 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 223 bp overlap

EBF1 1 dataset

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 276 bp overlap

ESR1 2 datasets

ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 116 bp overlap

ChIP breast_mrnahist ERP002305.ESR1.breast_mrnahist 126 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FOS::JUN 1 dataset

Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap

FOSB::JUN 1 dataset

Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap

FOSL2::JUN 1 dataset

Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap

FOSL2::JUND 1 dataset

Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap

FOXA1 1 dataset

ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 180 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 289 bp overlap

ChIP DE DE-FOXA2-2 273 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

JDP2 1 dataset

Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap

L3MBTL2 1 dataset

ChIP HEK293T ENCFF482NJV 289 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MAX 2 datasets

ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 120 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 205 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Mafg 1 dataset

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 6 datasets

ChIP WA01 ENCSR000BMT.NANOG.WA01 202 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 200 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 289 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 192 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 286 bp overlap

ChIP hESC GSE18292.NANOG.hESC 178 bp overlap

NCOR2 1 dataset

ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 213 bp overlap

NFIL3 1 dataset

Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap

Nfe2l2 1 dataset

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

ONECUT1 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 105 bp overlap

PKNOX2 1 dataset

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

RAD21 2 datasets

ChIP MCF-7 GSE72082.RAD21.MCF-7 147 bp overlap

ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 139 bp overlap

RARA 1 dataset

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 193 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 213 bp overlap

SOX14 1 dataset

Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap

SOX18 1 dataset

Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 247 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 280 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 226 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX21 2 datasets

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TBX4 1 dataset

Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

USF1 2 datasets

ChIP H1 ENCFF090WVU 203 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 226 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 157 bp overlap

ZNF24 1 dataset

Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 148 bp overlap

ZNF680 1 dataset

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap

ZNF85 1 dataset

Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap

Zfx 1 dataset

Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap