chr3 : 45,685,643 45,686,405
762 bp 42 TFs 6 linked genes
This 762 bp open chromatin element is linked to 6 target genes and is bound by 42 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
LIMD1-AS1 2.8 kb Proximal Proximity
SACM1L 2.8 kb Proximal Proximity
LIMD1 91.7 kb Distal Multiome
SLC6A20 110.4 kb Distal Multiome
LZTFL1 156.0 kb Distal Multiome
LARS2 297.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:45,680,643 – 45,691,405
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
BCL3 2 datasets
ChIP A-549 ENCSR000BQH.BCL3.A-549 69 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 84 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 203 bp overlap
CAVIN1 1 dataset
ChIP K562 ENCFF731YBD 341 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF189VBN 78 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 558 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 164 bp overlap
ChIP BLaER1 ENCFF093OYK 401 bp overlap
ChIP BLaER1 ENCFF335XTP 268 bp overlap
ChIP BLaER1 ENCFF460KDD 216 bp overlap
DDX20 1 dataset
ChIP K562 ENCFF373BEC 361 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 397 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 658 bp overlap
ChIP K562 ENCFF688PUB 436 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 645 bp overlap
ChIP DE DE-FOXA2-2 468 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 617 bp overlap
ChIP DE DE-GATA4-2 744 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 580 bp overlap
ChIP DE DE-GATA6-2 641 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 619 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 577 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 552 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 534 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 355 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 380 bp overlap
HDAC8 1 dataset
ChIP K562 ENCFF784HCJ 417 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 297 bp overlap
ID3 1 dataset
ChIP K562 ENCFF170RNI 481 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 505 bp overlap
ChIP K562 ENCFF771OHZ 497 bp overlap
IRF1 1 dataset
ChIP K562 ENCFF277KTJ 506 bp overlap
IRF9 1 dataset
ChIP K562 ENCFF346PQL 341 bp overlap
KLF6 1 dataset
ChIP K562 ENCFF948QSP 291 bp overlap
MEF2D 2 datasets
ChIP K562 ENCFF392LDT 402 bp overlap
ChIP K562 ENCFF392LDT 421 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF568JLK 411 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 465 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 129 bp overlap
PTTG1 1 dataset
ChIP K562 ENCFF017KRM 357 bp overlap
RELA 1 dataset
ChIP K562 ENCFF892SPR 425 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 341 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 225 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 342 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 442 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 585 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 547 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 627 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 762 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 510 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 378 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF465AQA 297 bp overlap
THRB 1 dataset
ChIP K562 ENCFF620NFN 291 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 397 bp overlap
ZNF215 1 dataset
ChIP K562 ENCFF317MOH 365 bp overlap
ZNF239 1 dataset
ChIP K562 ENCFF703IKI 331 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap
ZNF311 1 dataset
ChIP K562 ENCFF986QSP 365 bp overlap
ZNF41 1 dataset
ChIP K562 ENCFF693FMG 277 bp overlap
ZNF583 1 dataset
ChIP K562 ENCFF879KXH 357 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 405 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 146 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 73 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF447IXE 610 bp overlap
ZNF76 1 dataset
ChIP K562 ENCFF267KQX 361 bp overlap