chr3 : 30,630,452 – 30,630,847
395 bp 49 TFs 1 linked gene
This 395 bp open chromatin element is linked to KLHL25P1 and is bound by 49 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KLHL25P1 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:30,625,452 – 30,635,847
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 109 bp overlap
AGO2 3 datasets
ChIP HepG2 ENCFF252VFI 271 bp overlap
ChIP HepG2 ENCFF773YDL 272 bp overlap
ChIP HepG2 ENCFF773YDL 395 bp overlap
ARID1A 2 datasets
ChIP Hep-G2 GSE69566.ARID1A.Hep-G2 339 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 165 bp overlap
BRD4 6 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 117 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 150 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 386 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 188 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 210 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 261 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 348 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 158 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 274 bp overlap
FOXA1 1 dataset
ChIP HepG2 ENCFF740VZW 285 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 395 bp overlap
ChIP DE DE-FOXA2-2 395 bp overlap
ChIP HepG2 ENCFF570ABM 198 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 370 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 88 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 259 bp overlap
ChIP DE DE-GATA4-1 395 bp overlap
ChIP DE DE-GATA4-2 395 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 382 bp overlap
ChIP DE DE-GATA6-2 395 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 277 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 395 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 373 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 264 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 237 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 177 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 181 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 307 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 173 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 181 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 153 bp overlap
KMT2A 2 datasets
ChIP L826 GSE83671.KMT2A.L826 167 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 191 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 126 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 215 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 304 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 265 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 111 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 221 bp overlap
NFKBIZ 1 dataset
ChIP Hep-G2 ENCSR235OVI.NFKBIZ.Hep-G2 60 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 137 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 53 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 185 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 152 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 395 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 182 bp overlap
POLR2A 1 dataset
ChIP HepG2 ENCFF736SLT 197 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF241AEG 190 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 168 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 395 bp overlap
ChIP HepG2 ENCFF561IAJ 395 bp overlap
RELA 18 datasets
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 259 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 187 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 295 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 254 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 166 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 242 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 277 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 395 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 245 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 269 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 395 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 312 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 375 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 271 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 251 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 395 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 336 bp overlap
SSRP1 1 dataset
ChIP Hep-G2 ENCSR571PDN.SSRP1.Hep-G2 395 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 277 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 143 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 84 bp overlap
ZNF564 1 dataset
ChIP HepG2 ENCFF364ZIM 265 bp overlap
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