chr3 : 27,554,412 27,554,740
328 bp 45 TFs 0 linked genes
This 328 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,549,412 – 27,559,740
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 2 datasets
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 84 bp overlap
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 52 bp overlap
BRD4 8 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 214 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 328 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 51 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 70 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 180 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 132 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 54 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 83 bp overlap
CDK8 1 dataset
ChIP monocyte_LPS GSE120943.CDK8.monocyte_LPS 195 bp overlap
CEBPB 3 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 61 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 73 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 67 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 68 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 219 bp overlap
DPF2 1 dataset
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 226 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 289 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 68 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 142 bp overlap
ChIP BT-549 GSE46166.FOSL1.BT-549 63 bp overlap
FOXA1 1 dataset
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 166 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 296 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 174 bp overlap
GATA2 10 datasets
ChIP ESF GSE108408.GATA2.ESF 310 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 180 bp overlap
ChIP SH-SY5Y ENCFF485YIB 251 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 208 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 268 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 199 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 126 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 240 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 217 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 270 bp overlap
GATA3 10 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 242 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 152 bp overlap
ChIP MCF-7 ENCFF352QVM 311 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 228 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 207 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 205 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 105 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 160 bp overlap
ChIP SK-N-SH ENCFF040SSB 109 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 280 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 250 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 208 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 249 bp overlap
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 328 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 328 bp overlap
ChIP DE DE-GATA6-2 328 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 328 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 328 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 273 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 63 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 85 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 92 bp overlap
JUND 1 dataset
ChIP Kasumi-1_RUNX1-KO GSE117105.JUND.Kasumi-1_RUNX1-KO 79 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE79899.KMT2A.MV4-11 203 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 255 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 76 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 134 bp overlap
MED1 2 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 118 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 145 bp overlap
MYB 1 dataset
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 108 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 161 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 328 bp overlap
RAD21 2 datasets
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 51 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 66 bp overlap
RCOR1 1 dataset
ChIP AML_OG86 GSE112074.RCOR1.AML_OG86 290 bp overlap
RELA 16 datasets
ChIP 786-O GSE86092.RELA.786-O 129 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 87 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 81 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 148 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 91 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 59 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 123 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 67 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 68 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 121 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 128 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 71 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 101 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 185 bp overlap
ChIP mammary-epithelial-cell_IL1 GSE71069.RELA.mammary-epithelial-cell_IL1 292 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 84 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 129 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 188 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 149 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 257 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 279 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 194 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 328 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 328 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 151 bp overlap
SPI1 6 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 86 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 85 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 99 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 78 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 63 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 145 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 328 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 328 bp overlap
STAT3 3 datasets
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 50 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 328 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 281 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 252 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 231 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 54 bp overlap