chr3 : 18,379,605 18,380,279
674 bp 94 TFs 0 linked genes
This 674 bp open chromatin element has no linked target genes and is bound by 94 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:18,374,605 – 18,385,279
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Arid3b 1 dataset
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
BRD4 5 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 419 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 185 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 674 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 141 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 330 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP endodermal cell ENCFF471YCZ 321 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 352 bp overlap
DUXA 2 datasets
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 226 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 214 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 269 bp overlap
ChIP DE DE-GATA6-2 266 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 327 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
JUN 1 dataset
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 124 bp overlap
KMT2A 2 datasets
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 288 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 358 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 423 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 156 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 409 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 504 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 518 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 459 bp overlap
ChIP hESC GSE18292.NANOG.hESC 112 bp overlap
NFATC3 3 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 3 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 64 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 198 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 231 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 203 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RUNX1 1 dataset
ChIP THP-1 GSE79899.RUNX1.THP-1 185 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 159 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 484 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 674 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 203 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 239 bp overlap
SNAI2 2 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 225 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 5 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 236 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 224 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 194 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 141 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
USF1 4 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 241 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 2 datasets
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap