chr3 : 6,261,977 6,262,375
398 bp 44 TFs 0 linked genes
This 398 bp open chromatin element has no linked target genes and is bound by 44 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:6,256,977 – 6,267,375
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AHR 1 dataset
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 143 bp overlap
AR 6 datasets
ChIP LNCaP GSE80256.AR.LNCaP 357 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 190 bp overlap
ChIP breast_tumor_Male_17 GSE104399.AR.breast_tumor_Male_17 237 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 398 bp overlap
ChIP breast_tumor_Male_30 GSE104399.AR.breast_tumor_Male_30 181 bp overlap
ChIP breast_tumor_Male_8 GSE104399.AR.breast_tumor_Male_8 292 bp overlap
ASCL1 5 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 283 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 229 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 349 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 345 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 232 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 227 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 179 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 219 bp overlap
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 274 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 307 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 290 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 397 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 246 bp overlap
ChIP GM12878 ENCFF813OXE 197 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 180 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 141 bp overlap
ESR1 33 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 170 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 176 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 207 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 151 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 193 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 198 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 173 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 103 bp overlap
ChIP MCF-7_abemaciclib GSE157211.ESR1.MCF-7_abemaciclib 342 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 236 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 369 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 279 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 398 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 352 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 297 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 318 bp overlap
ChIP ZR751_E2_TAM ERP000380.ESR1.ZR751_E2_TAM 198 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 343 bp overlap
ChIP breast_tumor_Female_2 GSE104399.ESR1.breast_tumor_Female_2 379 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 202 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 354 bp overlap
ChIP breast_tumor_Male_12 GSE104399.ESR1.breast_tumor_Male_12 288 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 269 bp overlap
ChIP breast_tumor_Male_17 GSE104399.ESR1.breast_tumor_Male_17 242 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 273 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 398 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 296 bp overlap
ChIP breast_tumor_Male_4 GSE104399.ESR1.breast_tumor_Male_4 200 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 191 bp overlap
ChIP breast_tumor_Male_8 GSE104399.ESR1.breast_tumor_Male_8 270 bp overlap
ChIP breast_tumor_Male_9 GSE104399.ESR1.breast_tumor_Male_9 276 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 308 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 388 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 398 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 398 bp overlap
ChIP BT-474_AICAR GSE75876.ESRRA.BT-474_AICAR 327 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 308 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 257 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 99 bp overlap
FOXA1 25 datasets
ChIP MCF-7 ERP001226.FOXA1.MCF-7 245 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 237 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 234 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 138 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 254 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 185 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 203 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 213 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 211 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 144 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 267 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 313 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 324 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 290 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 346 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 345 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 385 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 290 bp overlap
ChIP breast-cancer_Herceptin-ICI GSE101407.FOXA1.breast-cancer_Herceptin-ICI 208 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 398 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 380 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 288 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 298 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 398 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 398 bp overlap
ChIP DE DE-FOXA2-2 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 315 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 398 bp overlap
ChIP DE DE-GATA4-2 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 398 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 398 bp overlap
ChIP DE DE-GATA6-2 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 398 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 199 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 396 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 329 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 398 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 159 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 278 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 211 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 359 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 256 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 191 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 241 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 143 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 155 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 302 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 375 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 398 bp overlap
RAD21 1 dataset
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 100 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 311 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 180 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 210 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 219 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 166 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 166 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 163 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 113 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 212 bp overlap