chr3 : 4,580,683 – 4,581,046
363 bp 48 TFs 0 linked genes
This 363 bp open chromatin element has no linked target genes and is bound by 48 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:4,575,683 – 4,586,046
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 3 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 79 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 159 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 172 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 150 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 86 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 169 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 83 bp overlap
CTBP1 2 datasets
ChIP K562 ENCFF403WPG 363 bp overlap
ChIP K562 ENCFF403WPG 81 bp overlap
CTCF 28 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 245 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 265 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 363 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 268 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 208 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 255 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 172 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 115 bp overlap
ChIP endodermal cell ENCFF471YCZ 363 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 134 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 137 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 287 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 200 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 193 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 157 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 199 bp overlap
ChIP uterus ENCFF631BWF 305 bp overlap
ChIP uterus ENCFF837OEY 363 bp overlap
ChIP uterus ENCSR684PGO.CTCF.uterus 212 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 226 bp overlap
E2F1 1 dataset
Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap
E2F2 1 dataset
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 65 bp overlap
ERF::NHLH1 1 dataset
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 8 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 155 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 189 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 217 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 199 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 198 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 182 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 215 bp overlap
ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 244 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 203 bp overlap
FOXA1 16 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 188 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 204 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 222 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 256 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 210 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 238 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 259 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 227 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 229 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 200 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 236 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 147 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 202 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 163 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 196 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 331 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 135 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 64 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 138 bp overlap
HMBOX1 4 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 363 bp overlap
ChIP K562 ENCFF055GAZ 363 bp overlap
ChIP K562 ENCFF317JJX 363 bp overlap
ChIP K562 ENCFF317JJX 137 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 142 bp overlap
ChIP K562 ENCFF348IBL 158 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 69 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 231 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 253 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 113 bp overlap
MSANTD3 1 dataset
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 102 bp overlap
NRF1 2 datasets
ChIP K562 ENCFF130SGK 363 bp overlap
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 220 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 126 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PGR 5 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 281 bp overlap
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 172 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 333 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 223 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 58 bp overlap
PKNOX1 5 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
ChIP HEK293T ENCFF174WDB 355 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 314 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 154 bp overlap
ChIP K562 ENCFF236IUS 321 bp overlap
POLR2A 1 dataset
ChIP ovary ENCFF425PQK 153 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 119 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 246 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 188 bp overlap
REST 2 datasets
ChIP HEK293 ENCSR896UBV.REST.HEK293 79 bp overlap
ChIP K562 ENCFF688UKW 145 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 106 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 125 bp overlap
SMARCA4 1 dataset
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 361 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 363 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 276 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 66 bp overlap
ZNF24 3 datasets
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 243 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 51 bp overlap
ChIP K562 ENCFF781QQQ 92 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 169 bp overlap
ZNF85 1 dataset
ChIP HEK293 GSE76494.ZNF85.HEK293 139 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 80 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
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