chr2 : 222,301,308 – 222,301,898
590 bp 57 TFs 1 linked gene
This 590 bp open chromatin element is linked to PAX3 and is bound by 57 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PAX3 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:222,296,308 – 222,306,898
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 246 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 335 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 132 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 590 bp overlap
BRD2 1 dataset
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 590 bp overlap
BRD4 6 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 251 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 204 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 188 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 292 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 288 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
Bach1::Mafk 1 dataset
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 225 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 370 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 120 bp overlap
ChIP H1 ENCFF095JHA 241 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 147 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 112 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 329 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 447 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 131 bp overlap
EZH2 25 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 462 bp overlap
ChIP GM23248 ENCFF404ZHM 92 bp overlap
ChIP GM23248 ENCFF404ZHM 297 bp overlap
ChIP GM23338 ENCFF613YON 590 bp overlap
ChIP GM23338 ENCFF886DXX 590 bp overlap
ChIP H1 ENCFF232NZA 590 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 474 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 536 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 86 bp overlap
ChIP SK-N-SH ENCFF657FZK 179 bp overlap
ChIP SK-N-SH ENCFF657FZK 380 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 590 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 348 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 568 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 590 bp overlap
ChIP fibroblast of lung ENCFF479BAW 197 bp overlap
ChIP fibroblast of lung ENCFF479BAW 474 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 320 bp overlap
ChIP hESC GSE113817.EZH2.hESC 331 bp overlap
ChIP hepatocyte ENCFF118DKH 343 bp overlap
ChIP hepatocyte ENCFF552DZB 590 bp overlap
ChIP keratinocyte ENCFF070STK 571 bp overlap
ChIP neural cell ENCFF610EPB 209 bp overlap
ChIP neural progenitor cell ENCFF018MKA 590 bp overlap
ChIP neural progenitor cell ENCFF472NFV 590 bp overlap
EZH2_phosphoT487 3 datasets
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 69 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 251 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 325 bp overlap
GATA6 2 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 93 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 150 bp overlap
GCM1 1 dataset
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 439 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 322 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 319 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 590 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 172 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 293 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 590 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 449 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 590 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 454 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 590 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 590 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 128 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 267 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 104 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 131 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 209 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 278 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 358 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 590 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 298 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 495 bp overlap
SMARCA4 1 dataset
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 163 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 236 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 547 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 424 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 590 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 145 bp overlap
SPI1 3 datasets
ChIP monocyte GSE31621.SPI1.monocyte 139 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 134 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 303 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 345 bp overlap
SUZ12 8 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 197 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 298 bp overlap
ChIP H1 ENCFF881NFR 590 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 590 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 532 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 590 bp overlap
ChIP NT2/D1 ENCFF574SXS 519 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 484 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 415 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 390 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 4 datasets
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 590 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 88 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 392 bp overlap
TP63 4 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 145 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 172 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 172 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 250 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 150 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 361 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 535 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 93 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 107 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF770 1 dataset
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 210 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
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