chr1 : 50,196,131 – 50,196,433

302 bp 53 TFs 0 linked genes

This 302 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

53 transcription factors

CTCF 1 dataset

Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 259 bp overlap

ETV6 2 datasets

Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap

Motif DE_48h DE_48h-ETV6_MA0645.2 9 bp overlap

ETV7 2 datasets

Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap

Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 2 datasets

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 302 bp overlap

ChIP THP-1 GSE135024.EZH2.THP-1 191 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 280 bp overlap

ChIP DE DE-FOXA2-2 302 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 302 bp overlap

ChIP DE DE-GATA4-2 302 bp overlap

ChIP foregut GSE117136.GATA4.foregut 277 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 302 bp overlap

ChIP DE DE-GATA6-2 302 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 302 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 302 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 302 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 302 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 302 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 302 bp overlap

IKZF2 1 dataset

Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap

KLF10 2 datasets

Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap

Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap

KLF12 2 datasets

Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap

Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap

KLF14 2 datasets

Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap

Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap

KLF5 2 datasets

Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap

Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap

MAZ 2 datasets

Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap

Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap

PATZ1 2 datasets

Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap

Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap

POU1F1 1 dataset

Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap

RARA::RXRA 2 datasets

Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap

Motif DE_48h DE_48h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 2 datasets

Motif DE_36h DE_36h-RARARXRG_MA1149.2 17 bp overlap

Motif DE_48h DE_48h-RARARXRG_MA1149.2 17 bp overlap

RBPJ 1 dataset

Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 302 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 302 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 302 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 271 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 302 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 302 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 302 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 302 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 302 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 224 bp overlap

SP1 2 datasets

Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap

Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap

SP2 2 datasets

Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap

Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap

SP4 2 datasets

Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap

Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap

SP5 3 datasets

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap

SPIB 2 datasets

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap

STAT1 1 dataset

Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap

Spi1 2 datasets

Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap

Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap

Stat4 1 dataset

Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap

Stat5a 1 dataset

Motif DE_48h DE_48h-Stat5a_MA1624.2 9 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_48h DE_48h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap

TAL1 1 dataset

ChIP PRIMA5 GSE33850.TAL1.PRIMA5 143 bp overlap

TBX2 1 dataset

Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap

TCF7L1 1 dataset

Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap

Vdr 2 datasets

Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap

Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap

ZNF136 1 dataset

Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap

ZNF143 1 dataset

Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap

ZNF148 2 datasets

Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap

Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap

ZNF263 1 dataset

Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap

ZNF281 2 datasets

Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap

Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap

ZNF283 1 dataset

ChIP HEK293T GSE78099.ZNF283.HEK293T 194 bp overlap

Zfp809 1 dataset

Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap