chr2 : 142,087,658 142,087,909
251 bp 56 TFs 0 linked genes
This 251 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:142,082,658 – 142,092,909
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 6 datasets
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 194 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 154 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 130 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 207 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 138 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 210 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 228 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 251 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 251 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 174 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 251 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 117 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 112 bp overlap
ChIP DE DE-FOXA2-1 251 bp overlap
ChIP DE DE-FOXA2-2 251 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
FOXI1 1 dataset
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_48h DE_48h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA3 3 datasets
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 198 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 232 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 217 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 165 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 251 bp overlap
ChIP DE DE-GATA4-1 251 bp overlap
ChIP DE DE-GATA4-2 251 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 251 bp overlap
ChIP foregut GSE117136.GATA4.foregut 251 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 251 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 251 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 162 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 185 bp overlap
ChIP DE DE-GATA6-1 251 bp overlap
ChIP DE DE-GATA6-2 251 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 251 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 251 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 251 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 251 bp overlap
ChIP foregut GSE117136.GATA6.foregut 251 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 251 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 251 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 251 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 251 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HMGA1 1 dataset
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 94 bp overlap
Irf1 2 datasets
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
MEF2A 1 dataset
Motif DE_48h DE_48h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_48h DE_48h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif DE_48h DE_48h-MEF2D_MA0773.1 12 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 229 bp overlap
NR3C1 2 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 121 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 173 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 159 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 251 bp overlap
POU1F1 1 dataset
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
PRDM1 1 dataset
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Pgr 2 datasets
Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 173 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 251 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 251 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 251 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 251 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 201 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 202 bp overlap
Stat2 2 datasets
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB32 1 dataset
Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap
ZIM3 2 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN3 1 dataset
Motif DE_48h DE_48h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF211 1 dataset
Motif DE_48h DE_48h-ZNF211_MA1974.2 10 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF652 2 datasets
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF677 2 datasets
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF768 1 dataset
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
ZNF8 1 dataset
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap