chr2 : 132,419,142 – 132,420,313
1,171 bp 55 TFs 1 linked gene
This 1.2 kb open chromatin element is linked to GPR39 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GPR39 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:132,414,142 – 132,425,313
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 355 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 655 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 433 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 622 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 673 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 287 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 199 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 261 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 127 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 264 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 456 bp overlap
BRD7 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 163 bp overlap
ELF3 4 datasets
ChIP PDAC GSE64557.ELF3.PDAC 279 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 833 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 116 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 580 bp overlap
ELK1::HOXB13 1 dataset
Motif DE_36h DE_36h-ELK1HOXB13_MA1932.2 15 bp overlap
EP300 1 dataset
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 285 bp overlap
ESR1 9 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 430 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 212 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 430 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 325 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 345 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 413 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 263 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 191 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 294 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 356 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 317 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 109 bp overlap
FOXA1 62 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 257 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 180 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 229 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 236 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 170 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 192 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 278 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 221 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 254 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 346 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 234 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 175 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 216 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 219 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 233 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 200 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 272 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 251 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 183 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 235 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 356 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 231 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 452 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 276 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 406 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 183 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 213 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 371 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 256 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 262 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 287 bp overlap
ChIP T-47D_DEX GSE72249.FOXA1.T-47D_DEX 188 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 345 bp overlap
ChIP T-47D_E2 GSE72249.FOXA1.T-47D_E2 222 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 274 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 244 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 212 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 239 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 236 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 348 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 329 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 285 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 221 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 273 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 343 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 483 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 367 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 401 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 467 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 479 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 448 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 219 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 211 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 767 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 496 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 237 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 494 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 308 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 194 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 222 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 309 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 194 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 77 bp overlap
ChIP DE DE-FOXA2-1 486 bp overlap
ChIP DE DE-FOXA2-2 345 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 180 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 653 bp overlap
ChIP DE DE-GATA4-2 911 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 409 bp overlap
ChIP DE DE-GATA6-2 891 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 329 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 462 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 241 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 267 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 414 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 328 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 225 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 725 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 283 bp overlap
HOXB13 1 dataset
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 176 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_36h DE_36h-HOXD12ELK1_MA1958.2 13 bp overlap
HSF2 1 dataset
Motif DE_36h DE_36h-HSF2_MA0770.1 13 bp overlap
IRF1 3 datasets
ChIP AsPC-1_IFNg GSE141606.IRF1.AsPC-1_IFNg 240 bp overlap
ChIP PDAC GSE64557.IRF1.PDAC 237 bp overlap
ChIP PDAC GSE64557.IRF1.PDAC 415 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 465 bp overlap
JUN 1 dataset
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 235 bp overlap
KLF6 2 datasets
ChIP PDAC GSE64557.KLF6.PDAC 164 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 464 bp overlap
MEN1 2 datasets
ChIP PC-3 GSE132827.MEN1.PC-3 210 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 668 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 267 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 514 bp overlap
NKX2-1 3 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 51 bp overlap
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 244 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 297 bp overlap
NR3C1 3 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 224 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 217 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 291 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 249 bp overlap
ONECUT1 1 dataset
ChIP H9 ERP004206.ONECUT1.H9 184 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 232 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 345 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 137 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF820WZN 345 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 551 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 262 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 447 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 351 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 336 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 340 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 275 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 98 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 338 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 350 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 143 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 282 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 343 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 340 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 427 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 334 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 294 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 195 bp overlap
STAT1 2 datasets
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 234 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 204 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 170 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 186 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 165 bp overlap
Thap11 1 dataset
Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap
YY1AP1 1 dataset
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 266 bp overlap
ZBTB26 1 dataset
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
ZKSCAN1 1 dataset
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
ZKSCAN3 1 dataset
Motif DE_36h DE_36h-ZKSCAN3_MA1973.2 14 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 290 bp overlap
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