chr2 : 119,475,367 119,475,534
167 bp 48 TFs 1 linked gene
This 167 bp open chromatin element is linked to SCTR-AS1 and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SCTR-AS1 912 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:119,470,367 – 119,480,534
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 67 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 89 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 113 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 105 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 108 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 141 bp overlap
CTCF 122 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 149 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 94 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 167 bp overlap
ChIP A673 ENCFF123WOM 167 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 137 bp overlap
ChIP Caco-2 ENCFF934QYS 167 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 138 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 108 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 167 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 150 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 167 bp overlap
ChIP GM12878 ENCFF485TGR 167 bp overlap
ChIP GM12878 ENCFF511URZ 167 bp overlap
ChIP GM23338 ENCFF772DML 86 bp overlap
ChIP H1 ENCFF230QSV 135 bp overlap
ChIP H1 ENCFF414GZI 167 bp overlap
ChIP H1 ENCFF764RHO 167 bp overlap
ChIP H9 ENCFF152GTF 167 bp overlap
ChIP HEC-1-B_RRFF-insertion GSE140868.CTCF.HEC-1-B_RRFF-insertion 65 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 149 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 167 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 115 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 125 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 161 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 167 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 157 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 112 bp overlap
ChIP HepG2 ENCFF127KUP 167 bp overlap
ChIP HepG2 ENCFF194VBQ 167 bp overlap
ChIP HepG2 ENCFF348BUL 165 bp overlap
ChIP HepG2 ENCFF668CTD 139 bp overlap
ChIP HepG2 ENCFF757EKU 164 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 167 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 147 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 114 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 132 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 130 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 130 bp overlap
ChIP K562 ENCFF082GOI 142 bp overlap
ChIP K562 ENCFF111MGE 167 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 149 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 121 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 167 bp overlap
ChIP MCF-7 ENCFF198DQX 158 bp overlap
ChIP MCF-7 ENCFF210JUZ 167 bp overlap
ChIP MCF-7 ENCFF414SZG 159 bp overlap
ChIP MCF-7 ENCFF424NQR 161 bp overlap
ChIP MCF-7 ENCFF844STM 161 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 167 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 129 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 149 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 120 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 62 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 167 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 103 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 125 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 167 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 167 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 167 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 159 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 167 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 167 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 165 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 167 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 159 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 131 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 152 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 159 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 156 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 167 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 146 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 161 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 111 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 153 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 145 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 167 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 167 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 167 bp overlap
ChIP endodermal cell ENCFF471YCZ 167 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 130 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 141 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 157 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 167 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 133 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 166 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 101 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 159 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 167 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 167 bp overlap
ChIP heart left ventricle ENCFF185CKY 167 bp overlap
ChIP heart left ventricle ENCFF244ZHV 167 bp overlap
ChIP heart left ventricle ENCFF354HOQ 152 bp overlap
ChIP heart left ventricle ENCFF548XHH 167 bp overlap
ChIP heart left ventricle ENCFF575JEQ 167 bp overlap
ChIP heart left ventricle ENCFF842XRG 167 bp overlap
ChIP heart left ventricle ENCFF987PUT 116 bp overlap
ChIP heart right ventricle ENCFF022KFI 167 bp overlap
ChIP heart right ventricle ENCFF027ORH 167 bp overlap
ChIP heart right ventricle ENCFF063GTP 167 bp overlap
ChIP heart right ventricle ENCFF435TKW 167 bp overlap
ChIP heart right ventricle ENCFF577TID 167 bp overlap
ChIP heart right ventricle ENCFF979TCT 167 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 167 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 167 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 167 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 111 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 133 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 143 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 144 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 142 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 167 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 167 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 167 bp overlap
ChIP myotube ENCFF981UHL 167 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 167 bp overlap
ChIP neural progenitor cell ENCFF420RBO 167 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 167 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 158 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 140 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 167 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 153 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 147 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 167 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 121 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 68 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 145 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 112 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 167 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 167 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 146 bp overlap
HMGA1 2 datasets
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 98 bp overlap
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 97 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 105 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 130 bp overlap
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 106 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 167 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 167 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 167 bp overlap
MYC 3 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 160 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 167 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 167 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 167 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 167 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 163 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 167 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 151 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 167 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 98 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 148 bp overlap
RAD21 19 datasets
ChIP H1 ENCFF698EWO 167 bp overlap
ChIP H1 ENCFF967OJF 167 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 50 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF360ZSW 167 bp overlap
ChIP HepG2 ENCFF906QIS 167 bp overlap
ChIP HepG2 ENCFF916QGM 167 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 111 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 87 bp overlap
ChIP K562 ENCFF169SQI 145 bp overlap
ChIP K562 ENCFF634XYR 167 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 163 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 167 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 146 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 103 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 153 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 135 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 152 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 104 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 167 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 166 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 167 bp overlap
SMC3 1 dataset
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 124 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 121 bp overlap
STAG1 5 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 167 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 167 bp overlap
ChIP HepG2 ENCFF843EBZ 167 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 132 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 122 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 167 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 167 bp overlap
TCF3 2 datasets
ChIP NPC GSE154479.TCF3.NPC 167 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 149 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 167 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 167 bp overlap
TFAP4 2 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 128 bp overlap
ChIP HepG2 ENCFF932XOY 155 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 144 bp overlap
USF1 7 datasets
ChIP H1 ENCFF090WVU 155 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 132 bp overlap
ChIP HepG2 ENCFF201JKA 120 bp overlap
ChIP HepG2 ENCFF807KYJ 151 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 167 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 167 bp overlap
ChIP WTC11 ENCFF699QGS 167 bp overlap
USF2 3 datasets
ChIP H1 ENCFF434EDF 167 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 167 bp overlap
ChIP WTC11 ENCFF139JAW 133 bp overlap
YY1 1 dataset
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 141 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 167 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 126 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 149 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 167 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 139 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 94 bp overlap