Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

Cebpa 2 datasets

ChIP BLaER1 ENCFF364PUR 339 bp overlap

ChIP BLaER1 ENCFF896HSY 50 bp overlap

Crx 3 datasets

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

DPRX 3 datasets

Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap

Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap

Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 333 bp overlap

FOS 1 dataset

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 565 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 527 bp overlap

ChIP DE DE-FOXA2-2 504 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 597 bp overlap

ChIP DE DE-GATA4-2 597 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 597 bp overlap

ChIP DE DE-GATA6-2 597 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 465 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 494 bp overlap

GSC 3 datasets

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 3 datasets

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

ID3 1 dataset

ChIP K-562 ENCSR005NMT.ID3.K-562 541 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 419 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 332 bp overlap

KMT2A 1 dataset

ChIP MV4-11 GSE79899.KMT2A.MV4-11 131 bp overlap

MED1 2 datasets

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 226 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 206 bp overlap

MEIS1 2 datasets

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MEIS3 1 dataset

Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap

MZF1 3 datasets

Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap

Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap

Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap

NR2F1 2 datasets

ChIP K-562 ENCSR970NKQ.NR2F1.K-562 277 bp overlap

ChIP K562 ENCFF221HJH 476 bp overlap

NR2F6 1 dataset

ChIP K562 ENCFF674RQA 414 bp overlap

NR3C1 1 dataset

ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 123 bp overlap

OTX1 3 datasets

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

OTX2 3 datasets

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap

PITX1 3 datasets

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX2 3 datasets

Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap

Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap

Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap

PITX3 3 datasets

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

Prdm5 2 datasets

Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap

Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap

RBBP5 1 dataset

ChIP K562 ENCFF070CVK 61 bp overlap

RHOXF1 3 datasets

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

RORA 3 datasets

Motif DE_48h DE_48h-RORA_MA0072.2 11 bp overlap

Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap

Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap

RUNX1 1 dataset

ChIP NB4 GSE81992.RUNX1.NB4 75 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 169 bp overlap

SIN3A 1 dataset

ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 111 bp overlap

SMAD2 2 datasets

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 387 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 554 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 344 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 317 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 597 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 497 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 375 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 416 bp overlap

SMC1A 1 dataset

ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 101 bp overlap

SMC3 1 dataset

ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 86 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 597 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 576 bp overlap

SP1 1 dataset

ChIP K562 ENCFF088XXV 247 bp overlap

SREBP2 1 dataset

ChIP monocyte GSE129202.SREBP2.monocyte 57 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 125 bp overlap

Sox1 1 dataset

Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap

Sox17 2 datasets

Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Sox6 2 datasets

Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

Sox7 2 datasets

Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

TCF3 1 dataset

ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 524 bp overlap

ZBTB24 2 datasets

Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap

Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap

ZNF320 3 datasets

Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap

Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap

Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap

ZNF416 3 datasets

Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap

Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap

Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap

Znf423 1 dataset

Motif DE_48h DE_48h-Znf423_MA0116.1 15 bp overlap

Gene	Dist. to TSS	Distance	Link type
SLC20A1	29.2 kb	Distal	Multiome
CKAP2L	89.5 kb	Distal	Multiome
CHCHD5	90.6 kb	Distal	Multiome
POLR1B	132.6 kb	Distal	Multiome
TTL	192.9 kb	Distal	Multiome
RGPD8	241.4 kb	Distal	Multiome

Genome Browser