chr2 : 101,249,749 101,250,223
474 bp 50 TFs 4 linked genes
This 474 bp open chromatin element is linked to 4 target genes and is bound by 50 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CNOT11 2.7 kb Proximal Proximity
RNF149 58.7 kb Distal Multiome
TBC1D8 98.7 kb Distal Multiome
RPL31 247.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:101,244,749 – 101,255,223
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 209 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 164 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 235 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 129 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 361 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 279 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 226 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 397 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 315 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 193 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 390 bp overlap
ChIP hESC GSE20650.NANOG.hESC 226 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PAX1 2 datasets
Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap
Motif ES_0h ES_0h-PAX1_MA0779.2 16 bp overlap
PAX9 2 datasets
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
Motif ES_0h ES_0h-PAX9_MA0781.2 16 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 11 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 294 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 359 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 474 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 218 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 174 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 406 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 239 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 178 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 220 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 285 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 275 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 182 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 271 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SRF 1 dataset
ChIP HepG2 ENCFF625QHW 81 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 283 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 159 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 336 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 474 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF460 1 dataset
ChIP HepG2 ENCFF007NNM 175 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF816 2 datasets
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap