Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Part of CCR4-NOT complex. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for CNOT11. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CNOT11 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CNOT11, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:101,001,648–101,002,871 | 250.7 kb | Distal (>10kb) Multiome | 1082 | |
| chr2:101,150,573–101,153,105 | 101.4 kb | Distal (>10kb) Multiome | 881 | |
| chr2:101,249,749–101,250,223 | 2.9 kb | Proximal (<10kb) Multiome | 50 | |
| chr2:101,251,158–101,251,706 | 1.4 kb | Proximal (<10kb) Multiome | 97 | |
| chr2:101,251,848–101,253,677 | 146 bp | At TSS Multiome | 1083 | |
| chr2:101,307,900–101,309,246 | 55.9 kb | Distal (>10kb) Multiome | 997 | |
| chr2:101,386,609–101,387,979 | 134.5 kb | Distal (>10kb) Multiome | 493 | |
| chr2:101,473,856–101,474,832 | 221.4 kb | Distal (>10kb) Multiome | 326 |
Genomic view of the CNOT11 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.