chr2 : 52,558,256 52,558,785
529 bp 55 TFs 0 linked genes
This 529 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:52,553,256 – 52,563,785
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 486 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 420 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 71 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 529 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 478 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 355 bp overlap
CTCF 2 datasets
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 201 bp overlap
E2F7 1 dataset
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 529 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 255 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
HDAC2 3 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 449 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 178 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 188 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IRF7 1 dataset
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 220 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 378 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 368 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 315 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 213 bp overlap
ChIP hESC GSE18292.NANOG.hESC 131 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 52 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NR1D2 1 dataset
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 352 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
RARA 2 datasets
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 409 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 129 bp overlap
RORA 2 datasets
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
RORB 2 datasets
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 458 bp overlap
RORC 1 dataset
Motif ES_0h ES_0h-RORC_MA1151.2 10 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 249 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 253 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 218 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 153 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 360 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 480 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 296 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 347 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 260 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 220 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 320 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 183 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 395 bp overlap