chr2 : 47,019,690 47,020,313
623 bp 52 TFs 3 linked genes
This 623 bp open chromatin element is linked to TTC7A, MCFD2, and CALM2 and is bound by 52 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
TTC7A 104.2 kb Distal Multiome
MCFD2 104.2 kb Distal Multiome
CALM2 156.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:47,014,690 – 47,025,313
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP MM1-S GSE43743.BRD3.MM1-S 345 bp overlap
BRD4 11 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 245 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 140 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 86 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 623 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 623 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 623 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 599 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 412 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 623 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 623 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 341 bp overlap
Bcl11B 1 dataset
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CDK8 1 dataset
ChIP MM1-S GSE43743.CDK8.MM1-S 522 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 451 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 156 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 256 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 370 bp overlap
CTCF 1 dataset
ChIP MM1-S GSE43743.CTCF.MM1-S 338 bp overlap
DNMT3B 2 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 159 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 211 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 236 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 182 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 570 bp overlap
ChIP DE DE-FOXA2-2 488 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 501 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 472 bp overlap
ChIP DE DE-GATA6-2 463 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 356 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 294 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 299 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 422 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 485 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 245 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 523 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 379 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 291 bp overlap
KLF9 1 dataset
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 134 bp overlap
MAX 3 datasets
ChIP K562 ENCFF524IJO 189 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 436 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 362 bp overlap
MED1 8 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 217 bp overlap
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 449 bp overlap
ChIP MM1-S_DMSO GSE36354.MED1.MM1-S_DMSO 312 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 623 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 350 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 386 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 590 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 623 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 192 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 457 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 494 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 501 bp overlap
MYC 6 datasets
ChIP BL41 GSE30726.MYC.BL41 127 bp overlap
ChIP BL41 GSE30726.MYC.BL41 92 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 595 bp overlap
ChIP MM1-S_JQ1 GSE42161.MYC.MM1-S_JQ1 169 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 369 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 374 bp overlap
MYCN 4 datasets
ChIP BE2C GSE80151.MYCN.BE2C 105 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 61 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 169 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 105 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 306 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 148 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 257 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 254 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 199 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 365 bp overlap
OSR1 1 dataset
Motif DE_48h DE_48h-OSR1_MA1542.2 8 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 266 bp overlap
RFX1 1 dataset
Motif DE_48h DE_48h-RFX1_MA0509.3 16 bp overlap
RUNX2 1 dataset
Motif DE_48h DE_48h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 358 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 174 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 539 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 331 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 273 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 303 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 120 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 105 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 127 bp overlap
ZBTB12 1 dataset
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 313 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 297 bp overlap