chr2 : 38,285,018 – 38,285,434
416 bp 47 TFs 1 linked gene
This 416 bp open chromatin element is linked to GAPDHP25 and is bound by 47 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GAPDHP25 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:38,280,018 – 38,290,434
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 18 datasets
ChIP 22Rv1 GSE85558.AR.22Rv1 173 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 220 bp overlap
ChIP VCaP GSE148358.AR.VCaP 334 bp overlap
ChIP VCaP GSE32892.AR.VCaP 158 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 185 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 407 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 416 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 220 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 276 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 179 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 189 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 166 bp overlap
ChIP VCaP_R1881_10C30 GSE32892.AR.VCaP_R1881_10C30 191 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 134 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 183 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 154 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 173 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 179 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 325 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 258 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 357 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 244 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 207 bp overlap
BRD4 5 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 294 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 353 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 343 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 329 bp overlap
ChIP VCaP_Darolutamide GSE148358.BRD4.VCaP_Darolutamide 254 bp overlap
CDX2 4 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 234 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 238 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 243 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 273 bp overlap
CREBBP 2 datasets
ChIP LS180 GSE39277.CREBBP.LS180 206 bp overlap
ChIP LS180_125 GSE39277.CREBBP.LS180_125 156 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 131 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 354 bp overlap
ChIP transverse colon ENCFF258CAS 241 bp overlap
ERF 1 dataset
ChIP VCaP_DOX GSE98809.ERF.VCaP_DOX 183 bp overlap
ERG 9 datasets
ChIP VCaP GSE83650.ERG.VCaP 316 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 316 bp overlap
ChIP VCaP GSE28950.ERG.VCaP 223 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 167 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 254 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 253 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 197 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 407 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 308 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 169 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 169 bp overlap
ETV1 1 dataset
ChIP LNCaP GSE47120.ETV1.LNCaP 110 bp overlap
FOXA1 4 datasets
ChIP LS180 GSE140533.FOXA1.LS180 311 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 211 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 302 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 245 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 202 bp overlap
ChIP DE DE-FOXA2-1 416 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA2 3 datasets
ChIP TF1 GSE73207.GATA2.TF1 269 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 264 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 148 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF437NQS 325 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 416 bp overlap
ChIP DE DE-GATA4-2 416 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 318 bp overlap
ChIP foregut GSE117136.GATA4.foregut 416 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 416 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 416 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 348 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 134 bp overlap
ChIP DE DE-GATA6-1 416 bp overlap
ChIP DE DE-GATA6-2 416 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 329 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 416 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 416 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 390 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 416 bp overlap
ChIP foregut GSE117136.GATA6.foregut 416 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 416 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 416 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 416 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 222 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 250 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 193 bp overlap
HNF4A 9 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 376 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 356 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 416 bp overlap
ChIP GP5D_SIRAD21 GSE51234.HNF4A.GP5D_SIRAD21 416 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 385 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 344 bp overlap
ChIP LoVo_PHASEM GSE51290.HNF4A.LoVo_PHASEM 283 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 416 bp overlap
ChIP hiPSC GSE104613.HNF4A.hiPSC 278 bp overlap
HOXB13 10 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 199 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 237 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 139 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 232 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 90 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 109 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 177 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 167 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 201 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 186 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 246 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 176 bp overlap
MED1 2 datasets
ChIP VCaP GSE148358.MED1.VCaP 222 bp overlap
ChIP VCaP_Veh GSE125245.MED1.VCaP_Veh 202 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 416 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 416 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 258 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 205 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 164 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 125 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 312 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 186 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 203 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 233 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 189 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 258 bp overlap
ChIP K562 ENCFF236IUS 166 bp overlap
RUNX1 2 datasets
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 167 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 113 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 416 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 275 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 359 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 169 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 265 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 260 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 416 bp overlap
ChIP Ishikawa ENCFF467DDW 240 bp overlap
TCF4 2 datasets
ChIP LS180 GSE31939.TCF4.LS180 196 bp overlap
ChIP LS180_125 GSE31939.TCF4.LS180_125 237 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCFF772OTG 301 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 343 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 90 bp overlap
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