chr2 : 27,654,817 27,655,565
748 bp 53 TFs 2 linked genes
This 748 bp open chromatin element is linked to SUPT7L and SLC4A1AP and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SUPT7L 8.1 kb Proximal Proximity
SLC4A1AP 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:27,649,817 – 27,660,565
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 117 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 141 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 287 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 175 bp overlap
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 219 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 224 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CREBBP 2 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 126 bp overlap
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 308 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 446 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 337 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 425 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 447 bp overlap
CTCF 17 datasets
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 152 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 88 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 176 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 165 bp overlap
ChIP PC-3 ENCFF487TUI 272 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 215 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 177 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 108 bp overlap
ChIP astrocyte ENCFF042YJV 190 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 89 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 172 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 95 bp overlap
ChIP endodermal cell ENCFF471YCZ 205 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 395 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 521 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 497 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 267 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 215 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 186 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE148277.ESR1.MCF-7 188 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 704 bp overlap
ChIP DE DE-FOXA2-2 593 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 745 bp overlap
ChIP DE DE-GATA4-2 748 bp overlap
ChIP foregut GSE117136.GATA4.foregut 575 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 748 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 370 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 423 bp overlap
ChIP foregut GSE117136.GATA6.foregut 456 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 203 bp overlap
ChIP liver ENCFF449HPV 214 bp overlap
ChIP liver ERP002306.HNF4A.liver 152 bp overlap
JUN 1 dataset
ChIP BT-549 GSE46166.JUN.BT-549 196 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 246 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 54 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 372 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 396 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 389 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 191 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 630 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 487 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 54 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 277 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 151 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 304 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 147 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 165 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 83 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 463 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 452 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 206 bp overlap
POLR2A 3 datasets
ChIP K562 ENCFF215CWW 677 bp overlap
ChIP spleen ENCFF706IUS 135 bp overlap
ChIP spleen ENCFF706IUS 338 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 354 bp overlap
RAD21 1 dataset
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 183 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 151 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 420 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 748 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 734 bp overlap
SMARCA4 11 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 121 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 90 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 334 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 384 bp overlap
ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 328 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 340 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 287 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 317 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 320 bp overlap
SMARCC1 5 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 280 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 224 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 269 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 263 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 269 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 163 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 181 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 235 bp overlap
STAT3 4 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 200 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 251 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 193 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 155 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 374 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 259 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 145 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
ChIP NPC GSE154479.TCF3.NPC 318 bp overlap
TGIF2 1 dataset
ChIP HepG2 ENCFF421ZJN 411 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 152 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 166 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 162 bp overlap