chrX : 78,746,202 – 78,746,826
624 bp 91 TFs 1 linked gene
This 624 bp open chromatin element is linked to LPAR4 and is bound by 91 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LPAR4 881 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:78,741,202 – 78,751,826
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap
AR 14 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 249 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 140 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 126 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 204 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 303 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 279 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 192 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 234 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 118 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 168 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 333 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 288 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 177 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 516 bp overlap
ARGFX 1 dataset
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 403 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CEBPA 1 dataset
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
DRGX 1 dataset
Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 240 bp overlap
ESR1 8 datasets
ChIP T-47D GSE148277.ESR1.T-47D 278 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 299 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 557 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 299 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 356 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 314 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 228 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 326 bp overlap
ESX1 1 dataset
Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap
FOXA1 46 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 251 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 277 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 196 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 159 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 183 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 199 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 151 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 155 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 121 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 130 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 253 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 283 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 251 bp overlap
ChIP T-47D_DEX GSE72249.FOXA1.T-47D_DEX 275 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 457 bp overlap
ChIP T-47D_E2 GSE72249.FOXA1.T-47D_E2 262 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 255 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 349 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 300 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 396 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 348 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 320 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 474 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 174 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 230 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 188 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 214 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 228 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 378 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 339 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 391 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 397 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 356 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 286 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 386 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 357 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 382 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 239 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 532 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 440 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 367 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 175 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 349 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 248 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 153 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 624 bp overlap
ChIP DE DE-FOXA2-2 585 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 314 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 266 bp overlap
ChIP DE DE-GATA4-1 502 bp overlap
ChIP DE DE-GATA4-2 503 bp overlap
ChIP foregut GSE117136.GATA4.foregut 493 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 511 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 322 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 357 bp overlap
ChIP DE DE-GATA6-2 525 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 284 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap
ChIP foregut GSE117136.GATA6.foregut 372 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 334 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 278 bp overlap
GSX1 1 dataset
Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap
HLF 1 dataset
Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap
HOXA1 1 dataset
Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_60h DE_60h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_60h DE_60h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap
HOXB13 2 datasets
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 157 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 258 bp overlap
HOXB2 1 dataset
Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_60h DE_60h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_60h DE_60h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_60h DE_60h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_60h DE_60h-HOXD8_MA0910.3 7 bp overlap
ISX 1 dataset
Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 353 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
LHX5 1 dataset
Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
LMX1A 1 dataset
Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap
Lhx4 1 dataset
Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap
MEOX1 1 dataset
Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 384 bp overlap
NFIL3 1 dataset
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NKX6-1 1 dataset
Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap
PDX1 1 dataset
Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 301 bp overlap
POU6F1 1 dataset
Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap
PRRX1 1 dataset
Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap
RAX2 1 dataset
Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 281 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 337 bp overlap
SHOX 1 dataset
Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 506 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 260 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 437 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 199 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 447 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 377 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 240 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 254 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Shox2 1 dataset
Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 231 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 159 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 266 bp overlap
TLX2 1 dataset
Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 128 bp overlap
UNCX 1 dataset
Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 208 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap
mix-a 1 dataset
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap
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