chr2 : 22,995,185 22,996,138
953 bp 62 TFs 0 linked genes
This 953 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:22,990,185 – 23,001,138
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 109 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 240 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 217 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 253 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 159 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 154 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 334 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 264 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 327 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 249 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 458 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 493 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 357 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 453 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 418 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 303 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 252 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 303 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 156 bp overlap
ESR1 3 datasets
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 159 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 526 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 87 bp overlap
Ebf2 1 dataset
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 298 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 824 bp overlap
ChIP DE DE-FOXA2-2 673 bp overlap
GATA2 8 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 315 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 193 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 396 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 337 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 674 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 291 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 124 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 351 bp overlap
ChIP NGP GSE65664.GATA3.NGP 321 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 242 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 866 bp overlap
ChIP DE DE-GATA4-2 885 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 772 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 733 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 272 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 915 bp overlap
ChIP DE DE-GATA6-2 879 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 783 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 372 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 649 bp overlap
ChIP foregut GSE117136.GATA6.foregut 741 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 415 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 333 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 714 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 304 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 370 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 257 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 257 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 272 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 285 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 473 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 402 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 928 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 188 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 246 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 245 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 179 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 276 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 260 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 164 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 120 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 473 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 472 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 337 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 181 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 228 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 909 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 206 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RELA 1 dataset
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 191 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 454 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 178 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 864 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 545 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 276 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 235 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 378 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 267 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 267 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 667 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 216 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 369 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 151 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 151 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 154 bp overlap
ZNF157 1 dataset
ChIP HEK293T GSE78099.ZNF157.HEK293T 269 bp overlap
ZNF547 1 dataset
ChIP HEK293T GSE78099.ZNF547.HEK293T 141 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap