chrX : 24,692,371 – 24,692,665

294 bp 61 TFs 1 linked gene

This 294 bp open chromatin element is linked to POLA1 and is bound by 61 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
POLA1		1.3 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

61 transcription factors

ATF2 3 datasets

Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap

ChIP K-562 ENCSR869IUD.ATF2.K-562 260 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 176 bp overlap

ATF3 2 datasets

ChIP K-562 ENCSR028UIU.ATF3.K-562 288 bp overlap

ChIP K562 ENCFF604FPV 294 bp overlap

ATF7 2 datasets

Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap

ChIP K-562 ENCSR972ZBV.ATF7.K-562 294 bp overlap

CREB1 1 dataset

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 149 bp overlap

DUX4 2 datasets

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

ChIP WA01 GSE94322.DUX4.WA01 294 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

EBF1 1 dataset

ChIP NALM-6 GSE126300.EBF1.NALM-6 180 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 197 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap

FOS 1 dataset

Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap

FOSB::JUN 1 dataset

Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap

FOSB::JUNB 1 dataset

Motif DE_12h DE_12h-FOSBJUNB_MA1136.1 10 bp overlap

FOSL1::JUN 1 dataset

Motif DE_12h DE_12h-FOSL1JUN_MA1129.1 10 bp overlap

FOSL1::JUND 1 dataset

Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap

FOSL2::JUN 1 dataset

Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap

FOSL2::JUNB 1 dataset

Motif DE_12h DE_12h-FOSL2JUNB_MA1139.2 10 bp overlap

FOSL2::JUND 1 dataset

Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-1 211 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 231 bp overlap

ChIP DE DE-GATA6-2 288 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 263 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

JDP2 1 dataset

Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap

JUN 6 datasets

Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 222 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 294 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 294 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 294 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 294 bp overlap

JUN::JUNB 1 dataset

Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap

JUNB 1 dataset

Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap

JUND 5 datasets

Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap

ChIP H1 ENCFF010YXS 285 bp overlap

ChIP H1 ENCFF468JZD 221 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 106 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 159 bp overlap

NR1D1 1 dataset

Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

ChIP K-562 ENCSR970NKQ.NR2F1.K-562 217 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

RARA 1 dataset

Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap

RORA 1 dataset

Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap

RUNX1 1 dataset

ChIP NALM-6 GSE126300.RUNX1.NALM-6 226 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 277 bp overlap

SP5 2 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SP7 1 dataset

ChIP HEK293 ENCSR468IJT.SP7.HEK293 294 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 246 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 180 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF12 1 dataset

ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 143 bp overlap

ZNF142 1 dataset

ChIP Hep-G2 ENCSR512ECF.ZNF142.Hep-G2 294 bp overlap

ZNF264 3 datasets

ChIP HEK293 GSE76494.ZNF264.HEK293 165 bp overlap

ChIP Hep-G2 ENCSR248BVU.ZNF264.Hep-G2 242 bp overlap

ChIP HepG2 ENCFF453WJV 294 bp overlap

ZNF280D 2 datasets

ChIP HEK293 ENCFF420AXB 293 bp overlap

ChIP HEK293 ENCSR451CYX.ZNF280D.HEK293 235 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCFF784SLD 242 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 269 bp overlap

ZNF398 1 dataset

ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 274 bp overlap

ZNF629 1 dataset

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 231 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap