chr20 : 4,912,668 4,913,330
662 bp 54 TFs 5 linked genes
This 662 bp open chromatin element is linked to 5 target genes and is bound by 54 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
SLC23A2 88.5 kb Distal Multiome
TMEM230 200.1 kb Distal Multiome
PCNA 207.0 kb Distal Multiome
CDS2 213.9 kb Distal Multiome
PRNP 226.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:4,907,668 – 4,918,330
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
None 1 dataset
ChIP HepG2 ENCFF731CFD 65 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 217 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 453 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 162 bp overlap
BRD4 5 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 635 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 434 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 662 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 634 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 194 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 437 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 82 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 216 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 75 bp overlap
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 167 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF105ZMI 123 bp overlap
ChIP GM12878 ENCFF105ZMI 378 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 74 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 56 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 438 bp overlap
ChIP DE DE-FOXA2-2 360 bp overlap
FOXK2 1 dataset
ChIP GM12878 ENCSR861JUQ.FOXK2.GM12878 293 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 347 bp overlap
ChIP DE DE-GATA4-2 508 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 404 bp overlap
ChIP DE DE-GATA6-2 373 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 306 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 181 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 188 bp overlap
IRF4 2 datasets
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 128 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 151 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 134 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 279 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 128 bp overlap
POLR2A 1 dataset
ChIP A549 ENCFF748RAW 311 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 564 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 277 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 202 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 54 bp overlap
SETX 1 dataset
ChIP A-549_Influenza_PR8_NS1 GSE52936.SETX.A-549_Influenza_PR8_NS1 161 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 171 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 250 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 383 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 241 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 125 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 621 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 568 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 657 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 548 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 503 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 631 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 436 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 519 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 178 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 197 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 263 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 185 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 222 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 124 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 96 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 51 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 185 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 228 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 460 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 170 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 180 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 304 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 170 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 102 bp overlap
ZNF304 1 dataset
ChIP HEK293T GSE78099.ZNF304.HEK293T 228 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 146 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 190 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 155 bp overlap