chr18 : 48,034,974 48,035,198
224 bp 40 TFs 0 linked genes
This 224 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:48,029,974 – 48,040,198
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 224 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 224 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 224 bp overlap
BRD4 8 datasets
ChIP BE2C GSE80151.BRD4.BE2C 224 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 224 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 132 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 224 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 224 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 219 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 218 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 89 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 138 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 224 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 224 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 183 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 224 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 224 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 161 bp overlap
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 224 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 224 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 192 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 224 bp overlap
ChIP SK-N-SH ENCFF764OZD 224 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 224 bp overlap
GATA3 4 datasets
ChIP BE2C GSE65664.GATA3.BE2C 158 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 215 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 221 bp overlap
ChIP SK-N-SH ENCFF040SSB 224 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 224 bp overlap
ChIP DE DE-GATA4-2 224 bp overlap
ChIP G296S GSE85628.GATA4.G296S 173 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 173 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 192 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 193 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 214 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 152 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 224 bp overlap
ChIP DE DE-GATA6-2 224 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 224 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 224 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 224 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 224 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 217 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 167 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 224 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 202 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 224 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 224 bp overlap
ChIP SK-N-SH ENCFF285GEQ 224 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 224 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 224 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 224 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 215 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 224 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 224 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 224 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 224 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 224 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 224 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 215 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 224 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 224 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 224 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 192 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 224 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 224 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 224 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 205 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 224 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 178 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 224 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 224 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 195 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 194 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 224 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 224 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 188 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 213 bp overlap
TCF4 3 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 224 bp overlap
ChIP SK-N-SH ENCFF270OWF 224 bp overlap
ChIP SK-N-SH ENCFF270OWF 123 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 154 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 154 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 160 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 224 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 224 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 224 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 224 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 224 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 224 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 56 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 96 bp overlap