chr16 : 68,420,400 68,420,906
506 bp 58 TFs 7 linked genes
This 506 bp open chromatin element is linked to 7 target genes and is bound by 58 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
ZFP90 109.5 kb Distal Multiome
PRMT7 109.5 kb Distal Multiome
SLC7A6OS 109.6 kb Distal Multiome
SLC7A6 156.0 kb Distal Multiome
PLA2G15 175.2 kb Distal Multiome
ESRP2 184.5 kb Distal Multiome
CDH3 224.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:68,415,400 – 68,425,906
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 242 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 276 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 213 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 230 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 506 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 233 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 62 bp overlap
CDX1 1 dataset
Motif DE_72h DE_72h-CDX1_MA0878.3 10 bp overlap
CDX2 4 datasets
Motif DE_72h DE_72h-CDX2_MA0465.3 8 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 304 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 143 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 198 bp overlap
CDX4 1 dataset
Motif DE_72h DE_72h-CDX4_MA1473.2 9 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 389 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 305 bp overlap
ChIP DE DE-FOXA2-2 333 bp overlap
GATA2 1 dataset
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 449 bp overlap
ChIP DE DE-GATA4-2 424 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 341 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 393 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 227 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 397 bp overlap
ChIP DE DE-GATA6-2 454 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 390 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 364 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 400 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 393 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 209 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 350 bp overlap
ChIP foregut GSE117136.GATA6.foregut 400 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 379 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HOXA10 1 dataset
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_72h DE_72h-Hoxd13_MA0909.4 7 bp overlap
ISL2 1 dataset
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
KLF13 1 dataset
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 314 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 312 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 175 bp overlap
NKX2-3 1 dataset
Motif DE_72h DE_72h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
Nkx3-1 1 dataset
Motif DE_72h DE_72h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_72h DE_72h-Nkx3-2_MA0122.4 10 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PDX1 4 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 201 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 238 bp overlap
ChIP islet ERP001456.PDX1.islet 152 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 484 bp overlap
RBM25 2 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 70 bp overlap
ChIP K562 ENCFF957ORK 111 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 325 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 199 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 341 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 260 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
THRA 1 dataset
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 146 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 111 bp overlap
ChIP K562 ENCFF361LXT 160 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 287 bp overlap