chr15 : 48,191,592 – 48,191,906
314 bp 37 TFs 1 linked gene
This 314 bp open chromatin element is linked to CTXN2-AS1 and is bound by 37 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CTXN2-AS1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:48,186,592 – 48,196,906
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ARRB1 1 dataset
ChIP LNCaP-C4-2 GSE55615.ARRB1.LNCaP-C4-2 130 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 232 bp overlap
BCOR 3 datasets
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 129 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 314 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 299 bp overlap
BRD4 9 datasets
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 169 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 239 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 314 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 310 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 314 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 314 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 275 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 200 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 166 bp overlap
BRF2 1 dataset
ChIP IMR-90_TERT GSE38303.BRF2.IMR-90_TERT 115 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 52 bp overlap
CTCF 5 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 314 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 273 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 55 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 307 bp overlap
ChIP neural cell ENCFF335ADI 126 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 208 bp overlap
EP300 4 datasets
ChIP neural ENCSR843ZUP.EP300.neural 248 bp overlap
ChIP neural cell ENCFF442QNK 314 bp overlap
ChIP neural cell ENCFF442QNK 123 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 163 bp overlap
ESR1 5 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 170 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 154 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 171 bp overlap
ChIP MCF-7_IL1b_IKK7 GSE67295.ESR1.MCF-7_IL1b_IKK7 164 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 102 bp overlap
EZH2 2 datasets
ChIP fibroblast of lung ENCFF479BAW 73 bp overlap
ChIP neural progenitor cell ENCFF018MKA 314 bp overlap
FOXA1 6 datasets
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 58 bp overlap
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 250 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 209 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 85 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 100 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 124 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 214 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 314 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 177 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 60 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 308 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 254 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 145 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 134 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 314 bp overlap
ChIP neural cell ENCFF623HQN 314 bp overlap
MYC 2 datasets
ChIP Kelly GSE138295.MYC.Kelly 264 bp overlap
ChIP NB69 GSE138295.MYC.NB69 314 bp overlap
MYCN 6 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 314 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 105 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 314 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 314 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 314 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 177 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 314 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 146 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 122 bp overlap
POLR2A 3 datasets
ChIP body of pancreas ENCFF675RCN 314 bp overlap
ChIP body of pancreas ENCFF675RCN 314 bp overlap
ChIP neural cell ENCFF604SPB 314 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 314 bp overlap
ChIP neural cell ENCFF564MOT 281 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 208 bp overlap
REST 20 datasets
ChIP GM12878 ENCSR000BGF.REST.GM12878 178 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 75 bp overlap
ChIP GM23338 ENCFF024TCL 176 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 314 bp overlap
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 213 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 130 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 94 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 129 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 187 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 128 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 314 bp overlap
ChIP PFSK-1 ENCFF845VHA 305 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 314 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 309 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 115 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 304 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 237 bp overlap
ChIP neural ENCSR000BTV.REST.neural 233 bp overlap
ChIP neural cell ENCFF882LXX 314 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 222 bp overlap
ChIP K562 ENCFF421AVO 293 bp overlap
ChIP K562 ENCFF421AVO 94 bp overlap
ChIP MCF-7 ENCFF973QAD 286 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 235 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 218 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 173 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 314 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 129 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 121 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 204 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 159 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 178 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 314 bp overlap
ChIP neural cell ENCFF795YGY 314 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752TCU 314 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 230 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 314 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 182 bp overlap
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