chr14 : 56,810,408 56,810,605
197 bp 43 TFs 2 linked genes
This 197 bp open chromatin element is linked to OTX2-AS1 and OTX2 and is bound by 43 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
OTX2-AS1 2.6 kb Proximal Proximity
OTX2 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:56,805,408 – 56,815,605
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 197 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 167 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 197 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 197 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 197 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 197 bp overlap
CBX2 3 datasets
ChIP K-562 ENCSR000ATU.CBX2.K-562 197 bp overlap
ChIP K562 ENCFF578AQI 197 bp overlap
ChIP K562 ENCFF578AQI 131 bp overlap
CBX7 5 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 197 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 197 bp overlap
ChIP hESC GSE133412.CBX7.hESC 197 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 197 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 197 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 77 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 179 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 89 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 191 bp overlap
CTCF 11 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 178 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 142 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 138 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 197 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 178 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 139 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 130 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 157 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 181 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 197 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 196 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 160 bp overlap
EZH2 10 datasets
ChIP GM23338 ENCFF613YON 175 bp overlap
ChIP H1 ENCFF232NZA 197 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 197 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 197 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 197 bp overlap
ChIP SK-N-SH ENCFF657FZK 197 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 197 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 197 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 197 bp overlap
ChIP hepatocyte ENCFF552DZB 197 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 135 bp overlap
ChIP DE DE-FOXA2-2 197 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 104 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 197 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 197 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 197 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 197 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 180 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 145 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 197 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 115 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 153 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 197 bp overlap
PCGF2 2 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 197 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 176 bp overlap
PHC1 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PHC1.HEK293T_PCGF2fl 197 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 197 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 197 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 133 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 195 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 197 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 197 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 178 bp overlap
RNF2 8 datasets
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 197 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 123 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 197 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 197 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 197 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 197 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 197 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 197 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 194 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 197 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 127 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 121 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 108 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 197 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 81 bp overlap
SMC1 2 datasets
ChIP HAP1 GSE94992.SMC1.HAP1 56 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 197 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 61 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 131 bp overlap
SS18 2 datasets
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 134 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 143 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 120 bp overlap
SUZ12 11 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 197 bp overlap
ChIP H1 ENCFF881NFR 197 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 197 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 197 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 197 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 197 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 197 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 197 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 197 bp overlap
ChIP NT2/D1 ENCFF574SXS 197 bp overlap
ChIP NT2/D1 ENCFF574SXS 197 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 118 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 70 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 184 bp overlap