chr13 : 109,345,970 109,346,471
501 bp 53 TFs 0 linked genes
This 501 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:109,340,970 – 109,351,471
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ATRX 3 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 92 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 309 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 188 bp overlap
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 418 bp overlap
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 90 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 257 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 403 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 418 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 150 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 501 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 286 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 163 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 152 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 258 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 297 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 230 bp overlap
Ebf2 1 dataset
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 369 bp overlap
ChIP DE DE-FOXA2-2 343 bp overlap
GATA2 3 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 461 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 187 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 311 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 179 bp overlap
ChIP SH-SY5Y ENCFF475HYF 80 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 291 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 347 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 183 bp overlap
ChIP DE DE-GATA4-1 501 bp overlap
ChIP DE DE-GATA4-2 501 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 460 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 501 bp overlap
ChIP DE DE-GATA6-2 501 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 501 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 475 bp overlap
ChIP foregut GSE117136.GATA6.foregut 367 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 364 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 339 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 501 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 376 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 288 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 175 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 150 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 51 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 263 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 53 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 452 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 73 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 286 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 310 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 501 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 411 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 138 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 53 bp overlap
Mecom 1 dataset
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Nkx3-1 1 dataset
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
PBX3 2 datasets
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 501 bp overlap
PKNOX1 2 datasets
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
PRDM1 2 datasets
ChIP A-549 ENCSR977FEF.PRDM1.A-549 60 bp overlap
ChIP A549 ENCFF012KDW 101 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 464 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 138 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 237 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 107 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 501 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 352 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 338 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 217 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 154 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 417 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 443 bp overlap
TBX2 3 datasets
ChIP Kelly GSE94822.TBX2.Kelly 215 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 105 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 161 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 252 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 252 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 288 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 288 bp overlap
ZBTB33 1 dataset
ChIP SK-N-SH ENCFF667JYU 70 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 347 bp overlap
ZNF274 2 datasets
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF667 1 dataset
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
ZNF701 1 dataset
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Znf423 1 dataset
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap