chr13 : 108,060,132 – 108,060,699
567 bp 51 TFs 0 linked genes
This 567 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:108,055,132 – 108,065,699
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 536 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 205 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 425 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 138 bp overlap
BRD4 1 dataset
ChIP 402-91 GSE111253.BRD4.402-91 234 bp overlap
CTCF 29 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 235 bp overlap
ChIP H9 ENCFF152GTF 359 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 258 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 279 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 237 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 220 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 173 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 248 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 325 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 269 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 266 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 328 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 249 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 207 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 184 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 338 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 130 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 257 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 173 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 200 bp overlap
ChIP neural progenitor cell ENCFF420RBO 308 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 124 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 145 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 261 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 217 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 259 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 371 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 174 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 208 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 330 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 88 bp overlap
ChIP hESC GSE18292.NANOG.hESC 67 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 315 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 558 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 101 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 567 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 169 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 567 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 280 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 319 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 248 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 258 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 156 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 343 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 79 bp overlap
SOX13 2 datasets
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX2 4 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 196 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 220 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 335 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox3 2 datasets
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 240 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 567 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 224 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 143 bp overlap
ZBTB12 2 datasets
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 335 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 109 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 136 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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