chr13 : 107,562,143 107,562,742
599 bp 49 TFs 0 linked genes
This 599 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:107,557,143 – 107,567,742
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
BCL6B 1 dataset
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 437 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 99 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 329 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 412 bp overlap
CTCF 1 dataset
Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 261 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 152 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 599 bp overlap
ChIP neural cell ENCFF442QNK 153 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 169 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 315 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 386 bp overlap
ChIP DE DE-FOXA2-2 272 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 261 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 193 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 483 bp overlap
ChIP DE DE-GATA4-2 497 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 499 bp overlap
ChIP DE DE-GATA6-2 442 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 309 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 362 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 591 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 386 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 455 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 277 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 338 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 517 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 228 bp overlap
MAF 1 dataset
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 182 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 325 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 148 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 260 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 194 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 289 bp overlap
PITX3 2 datasets
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 337 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 142 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 242 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 384 bp overlap
RAD21 5 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 130 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 599 bp overlap
ChIP neural cell ENCFF564MOT 470 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 210 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 227 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 446 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 157 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 563 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 391 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 530 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 454 bp overlap
SMARCA4 2 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 544 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 270 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 195 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 162 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 282 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 559 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 423 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 453 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 599 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 273 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 174 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 174 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 147 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 147 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF331 1 dataset
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF708 1 dataset
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap