chr13 : 106,488,817 106,489,342
525 bp 58 TFs 0 linked genes
This 525 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:106,483,817 – 106,494,342
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 173 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 63 bp overlap
EHF 1 dataset
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ELF2 1 dataset
Motif DE_36h DE_36h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
ELF4 1 dataset
Motif DE_36h DE_36h-ELF4_MA0641.1 12 bp overlap
ELK4 1 dataset
Motif DE_36h DE_36h-ELK4_MA0076.3 9 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 323 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 91 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 489 bp overlap
ChIP DE DE-FOXA2-2 363 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 413 bp overlap
ChIP DE DE-GATA4-2 442 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 408 bp overlap
ChIP DE DE-GATA6-2 448 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 325 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 368 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 372 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 399 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 377 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 268 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 140 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 120 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 224 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 128 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 107 bp overlap
MEN1 1 dataset
ChIP HCT-116_B1 GSE152144.MEN1.HCT-116_B1 313 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 375 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 170 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 119 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 388 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 486 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 330 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 123 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 209 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 237 bp overlap
SUPT6H 2 datasets
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 525 bp overlap
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 513 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZBTB11 1 dataset
Motif DE_36h DE_36h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
ZNF136 1 dataset
Motif DE_36h DE_36h-ZNF136_MA1588.1 15 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
ZNF75D 1 dataset
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap