chr13 : 90,314,938 – 90,315,565

627 bp 86 TFs 0 linked genes

This 627 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

86 transcription factors

Bach1::Mafk 1 dataset

Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap

CHD7 2 datasets

ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 267 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 382 bp overlap

CRX 3 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 262 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 346 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 405 bp overlap

CTCF 1 dataset

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 381 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 423 bp overlap

ETV5::DRGX 1 dataset

Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap

FOXA2 2 datasets

ChIP Caco-2 GSE66218.FOXA2.Caco-2 255 bp overlap

ChIP DE DE-FOXA2-1 269 bp overlap

FOXJ3 1 dataset

ChIP K562 ENCFF605HNH 300 bp overlap

FOXN3 1 dataset

Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap

GATA2 2 datasets

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 198 bp overlap

ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap

GATA4 6 datasets

ChIP DE DE-GATA4-1 486 bp overlap

ChIP DE DE-GATA4-2 511 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 505 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 458 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 365 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 16 datasets

ChIP DE DE-GATA6-1 418 bp overlap

ChIP DE DE-GATA6-2 534 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 355 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 483 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 419 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 473 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 498 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 430 bp overlap

ChIP YCC-3 GSE51705.GATA6.YCC-3 160 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 473 bp overlap

ChIP foregut GSE117136.GATA6.foregut 547 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 417 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 412 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 488 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 274 bp overlap

GFI1 1 dataset

Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

Gli1 1 dataset

Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap

HNF4A 4 datasets

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 134 bp overlap

ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 139 bp overlap

Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap

Motif DE_60h DE_60h-HNF4A_MA1494.2 14 bp overlap

HNF4G 1 dataset

Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap

Hand1 2 datasets

Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap

Hnf1A 1 dataset

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

MAFF 1 dataset

Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap

MCM5 1 dataset

ChIP K562 ENCFF457BWL 338 bp overlap

MED1 1 dataset

ChIP K562 ENCFF407YQW 385 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 191 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 214 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 223 bp overlap

Mafb 1 dataset

Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap

NFATC3 1 dataset

Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap

NKX2-2 1 dataset

Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap

NKX2-5 3 datasets

Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap

ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 274 bp overlap

ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 198 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_60h DE_60h-NR1H2RXRA_MA0115.1 17 bp overlap

NR2C2 1 dataset

Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap

NR2F1 1 dataset

Motif DE_60h DE_60h-NR2F1_MA1537.2 13 bp overlap

NR4A1 1 dataset

Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap

NRL 1 dataset

Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap

Nanog 1 dataset

Motif DE_60h DE_60h-Nanog_MA2339.1 7 bp overlap

Nfatc1 1 dataset

Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap

Nr2f6 1 dataset

Motif DE_60h DE_60h-Nr2f6_MA0677.2 13 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 428 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 206 bp overlap

PHF8 1 dataset

ChIP K562 ENCFF217UCA 210 bp overlap

PPARA::RXRA 1 dataset

Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 1 dataset

Motif DE_60h DE_60h-PPARD_MA1550.2 14 bp overlap

Pparg::Rxra 1 dataset

Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap

RBPJ 1 dataset

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 367 bp overlap

RXRB 1 dataset

Motif DE_60h DE_60h-RXRB_MA0855.1 14 bp overlap

RXRG 1 dataset

Motif DE_60h DE_60h-RXRG_MA0856.1 14 bp overlap

Rxra 1 dataset

Motif DE_60h DE_60h-Rxra_MA0512.2 14 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap

SMAD4 1 dataset

ChIP Caco-2 GSE112946.SMAD4.Caco-2 211 bp overlap

SMARCA4 2 datasets

ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 201 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 254 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 303 bp overlap

SMARCC1 3 datasets

ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 270 bp overlap

ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 249 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 174 bp overlap

SOX10 1 dataset

Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 233 bp overlap

ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 216 bp overlap

SOX4 1 dataset

Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap

SOX8 2 datasets

ChIP RH4 GSE116344.SOX8.RH4 289 bp overlap

ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 238 bp overlap

SPIB 1 dataset

ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 208 bp overlap

Sox11 1 dataset

Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap

Sox17 1 dataset

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Sox6 1 dataset

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

Stat4 1 dataset

Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap

Stat5b 1 dataset

Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap

TCF7L1 2 datasets

Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap

THRB 1 dataset

Motif DE_60h DE_60h-THRB_MA1574.2 13 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

Thap11 1 dataset

Motif DE_60h DE_60h-Thap11_MA1573.2 14 bp overlap

ZBTB24 1 dataset

Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap

ZBTB7C 1 dataset

Motif DE_60h DE_60h-ZBTB7C_MA0695.2 8 bp overlap

ZC3H4 1 dataset

ChIP K562 ENCFF343JOP 401 bp overlap

ZFP1 1 dataset

ChIP K562 ENCFF777OLK 127 bp overlap

ZIC1 1 dataset

Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap

ZKSCAN3 1 dataset

Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap

ZKSCAN5 1 dataset

Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF143 2 datasets

ChIP HeLa GSE39263.ZNF143.HeLa 196 bp overlap

ChIP K-562 GSE39263.ZNF143.K-562 188 bp overlap

ZNF416 1 dataset

Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap

ZNF449 1 dataset

ChIP K562 ENCFF038VEZ 123 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

Zfp335 1 dataset

Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap