chr13 : 67,228,846 67,229,223
377 bp 41 TFs 1 linked gene
This 377 bp open chromatin element is linked to PCDH9 and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCDH9 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:67,223,846 – 67,234,223
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 216 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 113 bp overlap
BRD4 4 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 254 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 176 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 222 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 145 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF041CKA 377 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 222 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 164 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 180 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 164 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 148 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 377 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 183 bp overlap
ChIP neural progenitor cell ENCFF472NFV 269 bp overlap
ChIP neural progenitor cell ENCFF472NFV 70 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 252 bp overlap
FOXA1 1 dataset
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 58 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 195 bp overlap
GABPA 2 datasets
ChIP SK-N-SH ENCFF755TJJ 342 bp overlap
ChIP SK-N-SH ENCFF755TJJ 154 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 274 bp overlap
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 355 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 274 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 185 bp overlap
KMT2A 4 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 201 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 60 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 188 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 377 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 186 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 337 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 191 bp overlap
MXI1 3 datasets
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 148 bp overlap
ChIP SK-N-SH ENCFF746HVJ 303 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 219 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 121 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 202 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 291 bp overlap
RAD21 2 datasets
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 377 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 202 bp overlap
RBAK 1 dataset
ChIP HEK293T GSE78099.RBAK.HEK293T 314 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 189 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 272 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCFF931NFD 302 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 175 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 75 bp overlap
SUZ12 1 dataset
ChIP LNCaP GSE39459.SUZ12.LNCaP 239 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 196 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 261 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 135 bp overlap
ZNF337 1 dataset
ChIP HEK293T GSE78099.ZNF337.HEK293T 228 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 152 bp overlap
ZNF716 1 dataset
ChIP HEK293T GSE78099.ZNF716.HEK293T 265 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 295 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 260 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 143 bp overlap
ZNF84 1 dataset
ChIP HEK293T GSE78099.ZNF84.HEK293T 119 bp overlap