chr13 : 58,844,634 – 58,845,318

684 bp 75 TFs 0 linked genes

This 684 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

75 transcription factors

Alx1 1 dataset

Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap

Alx4 1 dataset

Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap

Arid3a 1 dataset

Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

CUX1 1 dataset

Motif DE_36h DE_36h-CUX1_MA0754.3 9 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

DUX4 1 dataset

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

DUXA 1 dataset

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

Dux 1 dataset

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

FOS 1 dataset

Motif DE_36h DE_36h-FOS_MA1951.2 13 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 382 bp overlap

FOXB1 1 dataset

Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap

GATA2 1 dataset

Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 646 bp overlap

ChIP DE DE-GATA4-2 532 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 316 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 606 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 566 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 599 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 608 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 459 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

GLIS1 1 dataset

Motif DE_36h DE_36h-GLIS1_MA0735.2 15 bp overlap

GLIS3 1 dataset

Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

HOXB13 1 dataset

Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap

Hmx1 1 dataset

Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap

Hmx3 1 dataset

Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap

IRF4 1 dataset

Motif DE_36h DE_36h-IRF4_MA1419.2 14 bp overlap

IRF7 1 dataset

Motif DE_36h DE_36h-IRF7_MA0772.2 13 bp overlap

IRF8 1 dataset

Motif DE_36h DE_36h-IRF8_MA0652.2 13 bp overlap

Irf1 1 dataset

Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 354 bp overlap

Jun 1 dataset

Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

MEIS1 1 dataset

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

MGA::EVX1 1 dataset

Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

MXI1 1 dataset

Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap

Mecom 1 dataset

Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

Nr2e1 1 dataset

Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap

ONECUT3 1 dataset

Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

POU2F1 1 dataset

Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap

POU3F3 1 dataset

Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap

POU5F1B 1 dataset

Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap

PPARA::RXRA 1 dataset

Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap

PRDM9 1 dataset

Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap

PROP1 1 dataset

Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap

Pax7 1 dataset

Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap

Pparg::Rxra 1 dataset

Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

RELB 1 dataset

Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap

RUNX2 1 dataset

Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 300 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 386 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 434 bp overlap

SP5 2 datasets

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

TCF7L2 1 dataset

Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap

USF1 1 dataset

Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap

ZBTB12 1 dataset

Motif DE_36h DE_36h-ZBTB12_MA1649.2 7 bp overlap

ZBTB32 1 dataset

Motif DE_36h DE_36h-ZBTB32_MA1580.1 10 bp overlap

ZFP14 1 dataset

Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap

ZKSCAN5 1 dataset

Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF324 1 dataset

Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap

ZNF382 1 dataset

Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap

ZNF766 1 dataset

Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap

ZNF8 1 dataset

Motif DE_36h DE_36h-ZNF8_MA1718.1 20 bp overlap

Zfx 1 dataset

Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap