chr13 : 57,056,510 – 57,057,090

580 bp 56 TFs 0 linked genes

This 580 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

56 transcription factors

BRD4 1 dataset

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 353 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 295 bp overlap

CRX 2 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 228 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 377 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 251 bp overlap

Dmrt1 1 dataset

Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap

ELF1 1 dataset

Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 314 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 287 bp overlap

ChIP neural cell ENCFF442QNK 333 bp overlap

GATA2 1 dataset

Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 354 bp overlap

ChIP DE DE-GATA4-2 312 bp overlap

Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 388 bp overlap

ChIP DE DE-GATA6-2 317 bp overlap

Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 502 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 569 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 573 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 497 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 569 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 568 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 456 bp overlap

GRHL2 1 dataset

Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap

Gata3 1 dataset

Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap

Hic1 1 dataset

Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap

IRF2 1 dataset

Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap

Ikzf3 1 dataset

Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap

JUN 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap

MAFF 1 dataset

Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 216 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 220 bp overlap

MEIS1 1 dataset

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

NEUROD1 3 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 405 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 376 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap

NR5A1 1 dataset

Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap

NRL 1 dataset

Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap

OTX2 2 datasets

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 334 bp overlap

ChIP retina_pigment GSE60024.OTX2.retina_pigment 164 bp overlap

PHOX2B 1 dataset

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

PKNOX2 2 datasets

Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap

Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 190 bp overlap

PRDM1 1 dataset

Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap

Prdm4 2 datasets

Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap

Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap

SATB1 1 dataset

ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 240 bp overlap

SIX1 2 datasets

Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap

Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap

SIX2 4 datasets

Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap

Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap

ChIP HEK GSE73865.SIX2.HEK 292 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 270 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 571 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 409 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 555 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 430 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap

SMARCA4 1 dataset

ChIP NSC GSE125033.SMARCA4.NSC 327 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 374 bp overlap

SOX10 2 datasets

Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 168 bp overlap

SOX4 1 dataset

Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap

TGIF1 2 datasets

Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap

Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap

TGIF2 2 datasets

Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap

Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap

THAP1 2 datasets

Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap

Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap

TRPS1 1 dataset

Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap

ZEB1 1 dataset

ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap

ZIM3 3 datasets

Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap

Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap

ZNF135 1 dataset

Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap

ZNF184 1 dataset

Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap

ZNF189 1 dataset

Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap

ZNF214 1 dataset

Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap

ZNF708 2 datasets

Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap

Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap

ZSCAN16 1 dataset

Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap

ZSCAN29 1 dataset

Motif DE_36h DE_36h-ZSCAN29_MA1602.2 11 bp overlap

Zfp335 1 dataset

Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap