chr12 : 99,093,036 – 99,093,838
802 bp 62 TFs 1 linked gene
This 802 bp open chromatin element is linked to ENSG00000258039 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000258039 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:99,088,036 – 99,098,838
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 322 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 79 bp overlap
EHF 3 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF1 3 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ELF3 3 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
ELK4 3 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif DE_24h DE_24h-ELK4_MA0076.3 9 bp overlap
Motif DE_36h DE_36h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 280 bp overlap
ERF::FOXI1 3 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETV1 3 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 6 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV6 3 datasets
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
Motif DE_24h DE_24h-ETV6_MA0645.2 9 bp overlap
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
ETV7 3 datasets
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Motif DE_24h DE_24h-ETV7_MA1708.2 9 bp overlap
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Elf5 3 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 3 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 365 bp overlap
ChIP DE DE-FOXA2-2 337 bp overlap
FOXJ2::ELF1 3 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_36h DE_36h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELK1 3 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap
GABPA 3 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 359 bp overlap
ChIP DE DE-GATA4-2 342 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 384 bp overlap
ChIP DE DE-GATA6-2 463 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 490 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 334 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 432 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 636 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 530 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
IKZF1 3 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 3 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 251 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 253 bp overlap
NR1D1 2 datasets
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
Motif DE_36h DE_36h-NR1D1_MA1531.2 14 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 161 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 356 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 452 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 527 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 442 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 411 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 167 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 290 bp overlap
SPI1 2 datasets
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 64 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 78 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 280 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
ZBTB11 3 datasets
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
Motif DE_24h DE_24h-ZBTB11_MA2329.1 9 bp overlap
Motif DE_36h DE_36h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 3 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_24h DE_24h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
ZNF175 3 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF257 3 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF317 3 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 143 bp overlap
ZNF582 3 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
ZSCAN21 3 datasets
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_24h DE_24h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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