chr12 : 47,286,476 47,287,027
551 bp 67 TFs 2 linked genes
This 551 bp open chromatin element is linked to PCED1B and AMIGO2 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PCED1B 63.3 kb Distal Multiome
AMIGO2 206.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:47,281,476 – 47,292,027
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
CTCF 1 dataset
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DMRTC2 1 dataset
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 144 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 90 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 551 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000FAI.FOS.K-562 165 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 490 bp overlap
ChIP DE DE-FOXA2-2 487 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 66 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 418 bp overlap
ChIP DE DE-GATA4-2 447 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 424 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 459 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 447 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 343 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 425 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HNF1B 1 dataset
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HNF4A 1 dataset
Motif DE_48h DE_48h-HNF4A_MA1494.2 14 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 505 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 213 bp overlap
Lef1 1 dataset
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
MYOD1 1 dataset
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NFYA 5 datasets
ChIP HeLa-S3 ENCFF016YWF 324 bp overlap
ChIP HeLa-S3 ENCFF016YWF 120 bp overlap
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 218 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 255 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 115 bp overlap
NFYB 6 datasets
ChIP GM12878 ENCFF474DNH 270 bp overlap
ChIP HeLa-S3 ENCFF854TNJ 254 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 210 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 270 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 258 bp overlap
ChIP K562 ENCFF709RXX 284 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 219 bp overlap
NR1I2 1 dataset
Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap
NR4A1 2 datasets
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
ONECUT3 1 dataset
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PHOX2B 1 dataset
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PKNOX1 3 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 369 bp overlap
ChIP K562 ENCFF236IUS 261 bp overlap
ChIP K562 ENCFF236IUS 173 bp overlap
RARB 1 dataset
Motif DE_48h DE_48h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_48h DE_48h-RARG_MA1553.2 13 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 259 bp overlap
ChIP K562 ENCFF248CGR 286 bp overlap
ChIP K562 ENCFF957ORK 286 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
SNAI1 1 dataset
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 245 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 284 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 440 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 299 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
TCF12 1 dataset
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
TCF7 1 dataset
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF189 1 dataset
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap